G25197 (LOC105908101)


Basic Information

Item Value
gene id G25197
gene name LOC105908101
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24471039 ~ 24473147 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU31599
ggctttcagttttataaaaacatataaaatactttatttatttttaaagcgaACAGACGTTCAGCTAAATACcagaatacaaacaaaagaataTAGAAGTGGAGGATTCAATTAAAGTAATAAGATATTGTAAGTGAAACATcaggatttgtattttttttgtacatatttacacagaTGAAGACGAGTGTCTCAGTAACACACAAGCATCAGTGAACACCGTTACCATTACACAAAGCTGTAATATTACTCCTGTTTCACTAGGAGCAGAAATTATACATCAGACATTGTGCAcatgccatatatatatatatatatatagccCTGTGTTGTATTAAAAGAGCTGAGAAAATGTTCCTCGGACTTGTGTTGTTTGCGTGTGTCTAAGGTGATGTGGGGAGCAGGTGATGGAACACATGCTGGAAGATGTGACATTCTtctaatataaatgcaacacaaaatcACATTCCTGTAGATGCATTGTTAAATGACAGAGCAATTCTGTAGAATAGCGGAAGCCCCAGCACATTTTCTATTGACATTTAGCACAGCCATTAAAGCACTGGGATCACAGCAACAATCATGGTTAGTCAGTATTCTGGTTACATCCAGCTGCTTGCTGTTGTTCTTATACAGTTCATCAATCGAAACATAAAACTGCAGGGCACTTTTTGCTTTTTGGATGATCTATTCATCCTTGAAAACTTGACATGAGATGATATTAAGAGCAGCTTCAGTGAAGATTTGAGTGCATTCAGAAGACTGTGTAAGGTCAAGTGCAATACATCTcaacaatgtattttctgagatataatttatttactactatttactattattactcttattttaatatttggcCTAACAAAAAAATGACCACCACCTGGGTTAATAAAAAAAGGCTTAATATCCAGTGAGAGATAAATGATAAAAGTTTCAATTCTGCAAAAATCTGAAAGCAGAACAAAACCAAGTGTGTGCTATGTGTAATGATGACCTTAAACCAAACCATTCTGCCAAGTCCTCAAGTTTCATTTCATCACAGtgaaaaccaaattaaattactttgctTTGAGCATAATggaaaataagatttaaaacacaattcaagcataaataataaaaacatgaataataactataaaaaatagaaagtcataatagtaataaagaTGGGTTCAACTGCcaaactatttaatttgtttcactgtACTAAATCACTCTACCTCAACCTTGTTAGTAGACATGTATTGTGTTTCATTCAGTAATAGATAAACAAGGAGGGAAAGTCAATAGTCTGGCTGTTCTGCTGTATCTATTAGCATCTCTTAGCCACCATGAGCTCACTGGAGtggaacatttatttgaaaaatgtcaggaCTGTCTGGACTGAATCAGCAGAGTGAGACTGTCAGGGTAATAAGAGGGGGAACACATGGAAAATGACAGGAGAGAGACAAGGAAAGGCATGAGAAAAGACAGCAGGGAATAAGAAGGGGAACAGAAAAATGGGAGAATCgcagagggagaaggagatacTGTCCAATGGGGGAAGAGAAGAGCACAGCTAAGGGATGAGGAGCATATGTGATCCTCTCAGTGCCCAAGCCACACAGAGCCACCACCAGGCCCAAGGCACCGGAGACCTCAAGAGCCCAGCGGTTGATATCCATGTAACAACCTTGTCACATATGCTTATTAATGTGGAGAGATTGTAAAGAAAGGAAGACAAGACAAGAGAGCCAGGGAGACAGAGCGAGACTCGGGCAGTGGACGAATGTCAGTCGGGGTTTATGTGCAGGGTCTATCTAGCACGGTAGCAGTAGACGCCATGTCTGTGGTGCTCCGCTGGGAAGCCGAAGCTGCGCACACCGGGCTCATCAGGGCCGCAGTTGGGCCGTGGTTTGATGATGGGGTAGCGCAGACTCCCATCAGCCAGCCAGCCTGCATCACAACGGTCTAGTCCGAGGAACTTCCAGGCTGCGTAGAGCTGCCCCACCCGAGCGATCTCAGCCCTGTCCTCCTTACAAGCCTTCACAGCCTCTGTGAAGTTCAGCTTGTGGGGGTGTTGCAGGAAATACACCTTGCC

Function

NR:

description
PREDICTED: hyaluronan and proteoglycan link protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31599 True 2089 lncRNA 0.40 2 24471039 24473147

Neighbor

gene id symbol gene type direction distance location
AMCG00007638 NA coding upstream 9634 24449322 ~ 24461405 (+)
AMCG00007636 map1a,LOC106584644 coding upstream 121092 24336561 ~ 24349947 (+)
AMCG00007632 tubgcp4,LOC107695351 coding upstream 209140 24256146 ~ 24261899 (+)
AMCG00007633 LOC106526729,LOC108249217,LOC107091076,LOC102219664 coding upstream 240454 24229522 ~ 24230585 (+)
AMCG00007622 serinc4 coding upstream 393691 24056196 ~ 24077348 (+)
AMCG00007641 LOC107733946,LOC107685211,LOC108428500,LOC107737001,LOC103353203,LOC107662289 coding downstream 49318 24522465 ~ 24536808 (+)
AMCG00007639 NA coding downstream 99739 24572886 ~ 24574030 (+)
AMCG00007650 NA coding downstream 105984 24579131 ~ 24586370 (+)
AMCG00007649 NA coding downstream 120149 24593296 ~ 24620644 (+)
AMCG00007653 LOC106562248,LOC105016086,LOC106587394 coding downstream 221375 24694522 ~ 24704573 (+)
G25196 NA non-coding upstream 1272 24441297 ~ 24469767 (+)
G25148 cdkn2aip,LOC107757748,LOC107695352,LOC107730231,LOC107596431,LOC107701282 non-coding upstream 215126 24254790 ~ 24255913 (+)
G25138 NA non-coding upstream 242129 24228636 ~ 24228910 (+)
G25134 NA non-coding upstream 257595 24211682 ~ 24213444 (+)
G25103 NA non-coding upstream 317191 24150343 ~ 24153848 (+)
G25203 LOC105015055 non-coding downstream 11139 24484286 ~ 24490748 (+)
G25209 NA non-coding downstream 81121 24554268 ~ 24564852 (+)
G25300 NA non-coding downstream 344195 24817342 ~ 24861868 (+)
G25303 NA non-coding downstream 406218 24879365 ~ 24911371 (+)
G25302 NA non-coding downstream 461332 24934479 ~ 24941580 (+)
AMCG00007631 NA other upstream 276558 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 800960 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 1277518 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 1331518 23133811 ~ 23139521 (+)
G24606 NA other upstream 2188081 22281700 ~ 22282958 (+)
AMCG00007640 NA other downstream 3340 24476487 ~ 24499650 (+)
G25822 NA other downstream 3610675 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 3965497 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 4209024 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 4426911 28900058 ~ 28911566 (+)

Expression


Co-expression Network