G25248


Basic Information

Item Value
gene id G25248
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24498365 ~ 24542158 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU31671
ttacaagaaaataatttaattcggaacacaattattgtaatttgtttttcttaaaatattacatCACACACCCTTGGTttctgaacaaaaacacacaagtgaTCTGGAATCCATACTGAAATGTGGTAACACCAGAATGTCAAATTACATCatcatgacaaaaaaaaattaagagattagTAAACGAAACGTAAACCCTTGAATGAGCAGTTAATTacttacatgaaaaaaaatggaaacatcgCTCTTTGCGTTCAGCTCAGAGATCTGCTCCAAACCCCCACACCTCAACTCTGCTCTACACCTGATGACTCCTGGGAGAATGTGGAAGAGTTGTCCCTCGTCATCAGACCTGGCTCTAGTCATACCAAATGACCCTAGACACTGGATTTGTTTCCATTGAGAGCTGGTGTCAACAGGGCAGTAGGTGTCTGCTGAGTGCCTGAGCAGAATTATTAATCCCAGCAAGCCACCAGCATGCCTTTTTGCTTCGGGGAAAGAAACAACTAAAGAATGGTTAATGGAACCAGCAGCTGATATCACAATTTTCCTCCTAAAACTATACCATCTCCCCTCTACCAATATGAAAATACAACTTGAAGATCTGTTAATAATATGTCAGATCCAGTAATTGGTCTAAGCAGTCTGTTTGCATGAAATATTAGAACAAACCTGAAAACAGCTACTGCTTTGTGGTCCCACgtgtatatttataatgcatttcctACTCAAAATAATGTGGGGGTTTAGTAAGCAAAAGGAAAGCCTTTTCTctgctgtattttcatttaataattataataattataataataataataataatgaccataTAACAAGTGCTACGAATTAAGAACAACAATTTTAGTACTTTAAATGTCTTCTCAATAACCATTTGCCGCAGTAAAGAAATGGGGGGGAAACGGCATGGGTTTACACATTCGCCAATATCCATTGtttataagaacaaaacaaaaaatctctCTGGTGTACACAATTGCTCCGCTAATACATATTGTTCATCAAGGAAGTCAGCAGAGGCTTCCAGGATCCAGTCATcccatttctttaaaaacattagaTTTAAATGTGTGCCAGCTACAGATAACATACAAGCCACCATCAACCACAAACACTTCCCCTGGTccctaataaatacatatttaaatgtctaCATTGTCATGGTTTTAACTATTTTGCAGTTGTCACTAAGGTGTCATTTACCTCCCTTTATTTAATACCTAAGAGTGGCGATTTTATGCAGACAAGCACATCCATACATCCATAAGCACTCCCAAACGCCCATTTGCACACATCCACTcaaaatgataataacaataatcatcaaatcaaaaatatacaaaaacatagaAAACTAAAAGAGAGGCGGTGGTGAGAAAGGCCCCGTTCACTTCTGGATGAACAGGACTACTCTGCTACTGTATAGGGCATCACCCATCACTGTTCTAATGCAAGAGAATAAGAGACCCAAAAGAATGTCCAGCAGCCATCTATACAATTTTTATATccatatacactgatcagccataacattatgaccacctgcctaatattgtgtaggtcccccttttgccaccaaaacagccctgacccgtcgaggcatggactccactagacctctgaaggtgtgctgtggtatctggcaccaagacgttagcagcagatcctttaagtcctgtaagttgcgaggtggggtctccatggattggacttgtttgtccagcacatcccacagatgctcgattggattgagatcttgGGAAtatggaggccaagtcaacactttgaactcgtgattcattagaccaggtcaccttcttccattgctccgtggtccagttctgatgctcacgtgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31671 True 1877 lncRNA 0.39 2 24498365 24542158

Neighbor

gene id symbol gene type direction distance location
AMCG00007645 NA coding downstream 3156 24484012 ~ 24495209 (-)
AMCG00007643 NA coding downstream 18529 24471035 ~ 24479836 (-)
AMCG00007648 NA coding downstream 34018 24463727 ~ 24464347 (-)
AMCG00007644 ppip5k1,LOC105015023 coding downstream 95243 24368631 ~ 24403122 (-)
AMCG00007634 NA coding downstream 242324 24251466 ~ 24256041 (-)
AMCG00007647 rlbp1 coding upstream 4374 24546532 ~ 24550224 (-)
AMCG00007642 NA coding upstream 16897 24559055 ~ 24562456 (-)
AMCG00007646 pdia3,LOC107716732,LOC107753598,LOC107696263,LOC107661453 coding upstream 21637 24563795 ~ 24570297 (-)
AMCG00007652 ckmt1,LOC108418758,LOC105913433,LOC106584654,LOC105028550,LOC107661454,LOC107554962,LOC107753597 coding upstream 72342 24614500 ~ 24624473 (-)
AMCG00007651 NA coding upstream 87348 24629506 ~ 24645364 (-)
G25177 NA non-coding downstream 129992 24368169 ~ 24368373 (-)
G25176 NA non-coding downstream 144055 24350030 ~ 24354310 (-)
G25175 NA non-coding downstream 150946 24347099 ~ 24347419 (-)
G25079 mfap1 non-coding downstream 447929 24050148 ~ 24050436 (-)
G25078 NA non-coding downstream 448292 24049815 ~ 24050073 (-)
G25375 NA non-coding upstream 439776 24981934 ~ 24982139 (-)
G25387 NA non-coding upstream 446687 24988845 ~ 24989054 (-)
G25415 LOC108275329,LOC103046663,LOC108436939,LOC105912564,LOC107696286,LOC103375935,LOC106584709,LOC104942717,LOC107753195 non-coding upstream 665616 25207774 ~ 25247379 (-)
G25421 NA non-coding upstream 710558 25252716 ~ 25256361 (-)
G25446 NA non-coding upstream 909605 25451763 ~ 25452022 (-)
AMCG00007637 NA other downstream 216801 24262690 ~ 24281564 (-)
G25026 NA other downstream 525700 23971671 ~ 23972665 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other downstream 1078062 23406928 ~ 23420303 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other downstream 1921911 22561496 ~ 22576454 (-)
AMCG00007565 gatm other downstream 2139919 22340599 ~ 22358446 (-)
G25422 NA other upstream 722174 25264332 ~ 25264951 (-)
AMCG00007684 shf,LOC108430988 other upstream 1088634 25630792 ~ 25631592 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other upstream 1511606 26053764 ~ 26070848 (-)
AMCG00007704 NA other upstream 2815573 27357731 ~ 27370519 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other upstream 4352535 28894693 ~ 28921123 (-)

Expression


Co-expression Network