G25300


Basic Information

Item Value
gene id G25300
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24817342 ~ 24861868 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU31738
GCGAGAGAGACGGATGGACAGAGGGAGCAAGACTGAGACTCGGCCAATGGGGGAGGGACAgttagagagatagagaaagagtgAGGGGGAGAGAAACGGTGAGAAGGGAGTGGGAGTGAAAGAAAGCTtagcacatttataaataagaaaaaaaaaagaaaaaaaaatccaggaaCAGCTTTCCCAAGCAGCTTCATCCCCATCTTGGAAATAAAATAACGATGCAACACATGGACCACTAAAGAAAACAGACATTGCAATACTGAGGATTGACGAAAGCATCCGTTGCTGCCGCCGAAGATGCTCCTGCGGTTGATTTGGTGCTATAGTCTCCGGGCGCCCTGAAAATCAATGCTTTTGACTACAGGAGCAGGTTTCCTACCATGTCACTTTACATCTACCCAGCCGGAACCTTTACTATCACGCTGCTTCACTGATGCTACGATCTCGTGTAGGTcctttggggggaaaaaaacatggaagAATTATTTCCTTATATTCAAAAAGTGGGATGTTTCTCTGTACGGGGTACCACCTCCATGcccaggtttttgttttaactccCGTAAGAACTAAACCGGAGAGGGAGTCGGTTGCTATCTTTGGTTATCTAGCTGTATGAGTGTTATTCAGCCGTCATAAAGCTAGATAACCGAAAGTAGAAATGACTTCCAAACCTGCACTTTCCCTGGGGAGCGAAGAAAAACGATTCGACAAAAGGAGAAGAGAGAAACAAGCAAGGAAGTAGAGGCAAGAAGAGAAGAGCTGCTGAGATCCAAGAAAGTAATGCACCTACTGAAACCAGCTCCTCTAATGCCTCGTCTTCCGAGGGACACTGGAAGAAGTCTGGGGACCTGCAAGTGCTATGAGGATGTGGCTACAAGCCCAGCGGCTGCCAGCTATTCCCACCATGTCTCGATGGAGGAAGAACATAAAAGGGCACaatctttatataaaaaaatcaaacaaacaaacaaaaaatccgGTCAATCCCCCAAACCCCCCTTCccttacccccccacccccaggagACTTTAGTGCCATCTGTGCCCCCTGAGAAACAGCGAGACACTTCCAACCGATGCCAACGGGGACAAAGAAGCTGCCAGCCGCTGCCGTCCCCCGCCCTGCCAGATGCCATTTTGTGTTCCGGAGaactgtgagagtgtgtgtgggtgtgctgAGGAAGCCATCTTGAAAGGAAATCTTACTGCTGCTCCTAAAATGGCTGTGTTGGCACGAGAGCTGGCTGTGAAGTTGAGATGTGATGTCTGTCTGGGGACTGAGCGACCCTGCTCCTTCTCATGATGACTGCGCAATAACCCAGACAGAGACTGGCACACACCCAAGGCCTCCGCTAGAGCATGTGCCAACTTGCTGGGTATAATTATCTCCAGGCAATGGACCAGTCTGGGTGGACTTTACACAGGATAAGCCTTTGAACTGTGGACACCAaggcacacaaaaacaagaggGATTTACACCGGGAATAGAAGAGACtccacatttaaaaaggaaatgtgtgCATTGCCCGTGATTGGTGCTGTAGTCTCATGTGATCCTGACAGAAAGCAGGCCAGAGACAAATGTATCCGATTCCAGTTTATTCTAGTTAGAAAAAGTTTAAATTGCTGTAAAAAACAGCAATACTGTATTCAGTTATGTTGTTCTTCTGTACCCCTTCCCTCCAACATGGTGAAAACAGCAGCAGTCCAACTTTGTGAGGAAAAGGGGGGACAACTGTCAGAACCTAATATTAAACCTGCATCCCCGGTCTCATTCCCCTAAATAGGGCTGACAATCAGCCCTCCATGCCTGTCACTCTATCACTACAGGGAAGTGTCACAGTCATATTTAAAGCAGCTTCTGATTGACCTCACCAGGAGGTTTAGCTTCTTGGCCATTAAATAGTATGGAATCATTCAGTCTTTAACCCTTTAAACAACAGCCACAGAAACAATCACTAGAGAAGGAAAATTCTGACAGATTCTTGATTTCGGATGcattttgttataataataataataataataataataataataataataataataataatgataatattgtaTACCCTCTGTCCAACAGGGTTGCAtgataaacaaaacagtcaaaataGTGAAgttcataatatatataaataaacttaatttaatgtgggtatgtgtatatacaaatGTTTCTAATGTACGTAGATAAAATACAAGACTGAAttgcatttataatgtatttatgtatgggtGTTTGTTTCATAATTGAAATCCACAATTAATATCAGAAACAATTATACAGCACCAGCAAATATACACGGGGACAGAAAACCTATAACTGATAGTGGGAGCTGTAAAGCTGCCAGGCTTGCTCTGACTTGAGAGAAGGGCTTCCTAGTGTATGCCCAAACTCTCTGCAGTTACATGGAAAAAAGTGGAGGGTGCAcactggaattaaaatatttccttttgtcTAATAATAAGTACACAGATCTGTGTGTTTAGGGGATGATTGCACATTTCactatgttttaaaattgttgaACTAGTCATACACTTAATTCTCTTCATACAATGCACACCATGTAAACTGTTAAACTGCATCaaatttcacacaaaatgttttgtttcaaaaaAGGTCATTGTACAATATCTGAAAttctgattttaataataaacaattaattcaaa
>TU31739
CTTCCCTGAGCTCCATATATCCGCTTATCCATCAAGAGTAAAGGTGGGGgatcagagaaagagaaagagagggagagggagagaaagagcgaCTGCAAGTCAAATATGACTATAGATGGGACAGACACCAATGTACGTTGTACTTTTGAACTTATCGTTCTTGGAAAGATTTACGACAGATCCTCCTATAATCGAAAGGGACACTGGAAGAAGTCTGGGGACCTGCAAGTGCTATGAGGATGTGGCTACAAGCCCAGCGGCTGCCAGCTATTCCCACCATGTCTCGATGGAGGAAGAACATAAAAGGGCACaatctttatataaaaaaatcaaacaaacaaacaaaaaatccgGTCAATCCCCCAAACCCCCCTTCccttacccccccacccccaggagACTTTAGTGCCATCTGTGCCCCCTGAGAAACAGCGAGACACTTCCAACCGATGCCAACGGGGACAAAGAAGCTGCCAGCCGCTGCCGTCCCCCGCCCTGCCAGATGCCATTTTGTGTTCCGGAGaactgtgagagtgtgtgtgggtgtgctgAGGAAGCCATCTTGAAAGGAAATCTTACTGCTGCTCCTAAAATGGCTGTGTTGGCACGAGAGCTGGCTGTGAAGTTGAGATGTGATGTCTGTCTGGGGACTGAGCGACCCTGCTCCTTCTCATGATGACTGCGCAATAACCCAGACAGAGACTGGCACACACCCAAGGCCTCCGCTAGAGCATGTGCCAACTTGCTGGGTATAATTATCTCCAGGCAATGGACCAGTCTGGGTGGACTTTACACAGGATAAGCCTTTGAACTGTGGACACCAaggcacacaaaaacaagaggGATTTACACCGGGAATAGAAGAGACtccacatttaaaaaggaaatgtgtgCATTGCCCGTGATTGGTGCTGTAGTCTCATGTGATCCTGACAGAAAGCAGGCCAGAGACAAATGTATCCGATTCCAGTTTATTCTAGTTAGAAAAAGTTTAAATTGCTGTAAAAAACAGCAATACTGTATTCAGTTATGTTGTTCTTCTGTACCCCTTCCCTCCAACATGGTGAAAACAGCAGCAGTCCAACTTTGTGAGGAAAAGGGGGGACAACTGTCAGAACCTAATATTAAACCTGCATCCCCGGTCTCATTCCCCTAAATAGGGCTGACAATCAGCCCTCCATGCCTGTCACTCTATCACTACAGGGAAGTGTCACAGTCATATTTAAAGCAGCTTCTGATTGACCTCACCAGGAGGTTTAGCTTCTTGGCCATTAAATAGTATGGAATCATTCAGTCTTTAACCCTTTAAACAACAGCCACAGAAACAATCACTAGAGAAGGAAAATTCTGACAGATTCTTGATTTCGGATGcattttgttataataataataataataataataataataataataataataataataatgataatattgtaTACCCTCTGTCCAACAGGGTTGCAtgataaacaaaacagtcaaaataGTGAAgttcataatatatataaataaacttaatttaatgtgggtatgtgtatatacaaatGTTTCTAATGTACGTAGATAAAATACAAGACTGAAttgcatttataatgtatttatgtatgggtGTTTGTTTCATAATTGAAATCCACAATTAATATCAGAAACAATTATACAGCACCAGCAAATATACACGGGGACAGAAAACCTATAACTGATAGTGGGAGCTGTAAAGCTGCCAGGCTTGCTCTGACTTGAGAGAAGGGCTTCCTAGTGTATGCCCAAACTCTCTGCAGTTACATGGAAAAAAGTGGAGGGTGCAcactggaattaaaatatttccttttgtcTAATAATAAGTACACAGATCTGTGTGTTTAGGGGATGATTGCACATTTCactatgttttaaaattgttgaACTAGTCATACACTTAATTCTCTTCATACAATGCACACCATGTAAACTGTTAAACTGCATCaaatttcacacaaaatgttttgtttcaaaaaAGGTCATTGTACAATATCTGAAAttctgattttaataataaacaattaattcaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31738 True 2684 lncRNA 0.42 5 24820099 24861868
TU31739 False 2052 lncRNA 0.41 4 24817342 24861868

Neighbor

gene id symbol gene type direction distance location
AMCG00007658 NA coding upstream 11854 24804508 ~ 24805488 (+)
AMCG00007659 NA coding upstream 18336 24795449 ~ 24799006 (+)
AMCG00007657 unc45a coding upstream 23601 24785292 ~ 24793741 (+)
AMCG00007660 NA coding upstream 34217 24781357 ~ 24783125 (+)
AMCG00007655 NA coding upstream 56053 24742934 ~ 24761289 (+)
AMCG00007665 NA coding downstream 120805 24982673 ~ 24984023 (+)
AMCG00007664 NA coding downstream 123129 24984997 ~ 24988135 (+)
AMCG00007663 parp6,LOC106587213 coding downstream 153808 25015676 ~ 25035688 (+)
AMCG00007670 celf6,LOC104962849,LOC106911022 coding downstream 206193 25068061 ~ 25076698 (+)
AMCG00007669 celf6,LOC103138107 coding downstream 279062 25140930 ~ 25170375 (+)
G25209 NA non-coding upstream 252490 24554268 ~ 24564852 (+)
G25203 LOC105015055 non-coding upstream 326594 24484286 ~ 24490748 (+)
G25197 LOC105908101 non-coding upstream 344195 24471039 ~ 24473147 (+)
G25196 NA non-coding upstream 347575 24441297 ~ 24469767 (+)
G25148 cdkn2aip,LOC107757748,LOC107695352,LOC107730231,LOC107596431,LOC107701282 non-coding upstream 561429 24254790 ~ 24255913 (+)
G25303 NA non-coding downstream 17497 24879365 ~ 24911371 (+)
G25302 NA non-coding downstream 72611 24934479 ~ 24941580 (+)
G25367 NA non-coding downstream 91257 24953125 ~ 24953328 (+)
G25405 NA non-coding downstream 453919 25315787 ~ 25321025 (+)
G25445 NA non-coding downstream 589665 25451533 ~ 25451793 (+)
AMCG00007640 NA other upstream 317692 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 622861 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 1147263 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 1623821 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 1677821 23133811 ~ 23139521 (+)
G25822 NA other downstream 3221954 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 3576776 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 3820303 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 4038190 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 4141227 29003095 ~ 29006379 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034569 NA non-coding NC_007118.7 CM002891.2 14353514 ~ 14381994 (-)