G25302


Basic Information

Item Value
gene id G25302
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 24934479 ~ 24941580 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU31742
GGGAAtgtaagcaaacaaacagatgcAGGTCTGAAATTACATGTCATGGATAAGAGAAGAAAAGGACACAATTTATGTTATTGTggcattactttatttattaaacagacTGTAAGCTAAGTATTTACATTGtatgataaaataaagtgttaatatattgaacaaattgccaaaaaataataatacataactgATCAGCAGTAGAGATCAGTTACAACCAAGTTAATGAAATTCAATTCATATAGTTCAGACCGCAATGAATTTATGAATGTACAATTCAACTTCCAATCTAAAGTGTTGCAAACCATTACTGATACAGGCCTAAATGTATTCTCAGGAGAAAAAATCATTATTGAACATCAACATTTTATCATAAAGAGCAAAAGGGTTTATGACCGGTGCATTCATTAtcatagaaaaatattaaacagagaTTCACACAGCTTTCACAATCGGCTAAGCTTTAACACAGTGTTAACGATTTctaatattttagaaaaattaTGTTTGTAGTATATACTTTCATCTCTGCTCTGTAGTTTAGTCCAGAAGTGCAAAGATCTCTTTTGTGATGCATTTGCAGCATAAATACAATGTCTCCCTGCTTTGTACCATAATGCACCACGCTGTAAATGGACGGAGGTCATTATGCAAGCAGTTAATTATCCATCAATGTAGTGTTTCTTTAAACGGGGGAGGGAGTACAATTTCATCACACTAATGTGAAAGCAAtcacttcatatttttttccaacaccaaccaaattatttacaatatatatataaaaataaaaacaattactgaaatctgaataacaaaatcaattacCTTATAAGATGTACACATTCCTGTACTCACTTCCATGTTGGGTGCaggaaaaataacacaaagaggatttgttttattttgtagaagAGGGAATCTACAAAGGCTTAACAATCAAGAAAATAGAAGTGTTGAAAGAGTTCACGTAGAGACAAACTGAACAtagtttattattctttaacTAGACATGCATGGTGATTATAAAGCAAAGAACAGAAggcatttcaaagctttttcattgagtgcatttgtattttttctatttattcccccccctcgattaaataaaagcaaagttttgTTTGAAAGCATACgttaaatttcaaaaacaatctTATTATATTCCATTCCTATGTTAATTGCAGTGCACAATTTCAACTTCAATCCTTCATGTTAACACTAGTTAgcaaaagcttaaaaaaaatcttcaataaAGTGCTCTTTCACAGTTATGCTGCGGTGCATCTTGTTCCGGGACTGGAGATGCACCTTAAGTTGCACCTGATGTTGCTGCAGATCCCAGAGGTGACCATCAAATTTATACACCAATTAAAACTGTCACATAAAGATTGTCTGTACACAGGAGTTCACACACCGGGGCTTCTTCCAACTGCACCTGTTCTGCAAGGCTTTGCAAACGATCTGCACAGGACGCTTGATGTCAGCAAAAAGGGGCTTCGGTTAGGTTTATGATTTGAAAAGAGGATGTGGAGTAGACAATACTGGCTCTGGTCCCAGGACAGTTTTTAACAGAGTCCTGTTTTATAGGTTCTTACTCATAGCACTGAGTAGCCGTGGGGAGAGGAGGATGTGGTGATGGCTGGCCCCGTTAAAGTTGAAAGTGTTTGCCAGCCTGGAGataaaaaaaggcagttttactccaacttgcgtgaatccGGCAGTAGTGGCAGGGTTGAACATGGGGTGGCTGGCAGGGTTCTCTGAATCAACGTACCCTTCCGCGCTGTAGACAGACtcagtggcagcagcagcagtaatagcACCCACAACTCCTCCTATAAAGCCTGGCATGGCATGCAAGTTGTGTATGCCACAGGTGTCCTGAATATGGAGCTTAGACTCCAGGAAAGGTTATATAGATGTAGCCCAGCGTGGAGATGATACCACAGAAGAAACCCACGATCAGGCAGCCATAGGGCATCAGCATGAACTCAGCTGCAGTTCCCACGGCAACACCCCCGGCCAGTGTGGAATTCTGGATGTGCACCTGGAAGACCACACAGGCCGGGTCagagagaaaagacagacagagatggcTCTACATTCCCATAGAAGATAGGTTTGCATATATGTAATCCTAGCAATCCCACTATCCTGCATACACAGATGAAGGGTGCAGGATGCAGGTACCAACAGGCACAATTTAACTCCTGTACTGACAAACCTATGATGCAAgcctttcaaaatacattttctgcaatgGGACAGACACAGGAAAGTTCTGAGCTTCAGTAAGACTGTAACACTAGACCTAGACAAATGAAGGAATGGAGAGCAGTACCATGTCCAATTTGCCCTTCTTTTGTGTCAGACTGGAGATGGCCACTGTGGTGAGGACGCTTGCTGTCAGTGTCAAGTAAGTGTTGAGGGCGGCCCTGTGCTGCCCATCACCATGGGCTGAGGTGGCAGAGTTGAAACTGGGCCAGAACATCCAAAGGAAAAGTGTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31742 True 2515 lncRNA 0.40 3 24934479 24941580

Neighbor

gene id symbol gene type direction distance location
AMCG00007658 NA coding upstream 128991 24804508 ~ 24805488 (+)
AMCG00007659 NA coding upstream 135473 24795449 ~ 24799006 (+)
AMCG00007657 unc45a coding upstream 140738 24785292 ~ 24793741 (+)
AMCG00007660 NA coding upstream 151354 24781357 ~ 24783125 (+)
AMCG00007655 NA coding upstream 173190 24742934 ~ 24761289 (+)
AMCG00007665 NA coding downstream 41093 24982673 ~ 24984023 (+)
AMCG00007664 NA coding downstream 43417 24984997 ~ 24988135 (+)
AMCG00007663 parp6,LOC106587213 coding downstream 74096 25015676 ~ 25035688 (+)
AMCG00007670 celf6,LOC104962849,LOC106911022 coding downstream 126481 25068061 ~ 25076698 (+)
AMCG00007669 celf6,LOC103138107 coding downstream 199350 25140930 ~ 25170375 (+)
G25303 NA non-coding upstream 23108 24879365 ~ 24911371 (+)
G25300 NA non-coding upstream 72611 24817342 ~ 24861868 (+)
G25209 NA non-coding upstream 369627 24554268 ~ 24564852 (+)
G25203 LOC105015055 non-coding upstream 443731 24484286 ~ 24490748 (+)
G25197 LOC105908101 non-coding upstream 461332 24471039 ~ 24473147 (+)
G25367 NA non-coding downstream 11545 24953125 ~ 24953328 (+)
G25405 NA non-coding downstream 374207 25315787 ~ 25321025 (+)
G25445 NA non-coding downstream 509953 25451533 ~ 25451793 (+)
G25531 NA non-coding downstream 1112121 26053701 ~ 26061246 (+)
G25561 NA non-coding downstream 1192781 26134361 ~ 26134577 (+)
AMCG00007640 NA other upstream 434829 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 739998 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 1264400 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 1740958 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 1794958 23133811 ~ 23139521 (+)
G25822 NA other downstream 3142242 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 3497064 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 3740591 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 3958478 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 4061515 29003095 ~ 29006379 (+)

Expression


Co-expression Network