G25421


Basic Information

Item Value
gene id G25421
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 25252716 ~ 25256361 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU31882
tatgttaaatgtatttatttataaacagcaacacatcaattaaatacaaatattagcTTTCATTAATAGAACTATAAAGTATATGACATTATTGCATTCAGCACTCATTTACTTGTAAGAGCATTAATTAGCAAAGTGTTTAAAGAAAGGATTGTCAGGTCAGTTGCATAGTACAGATATGTGCAGTGACAGCAactgcacactgcactgtgGGATAAACACTATCTATAtagaacacactcacacatatagaatacatacacagacacgtGTTTGTagttcaaaacacaaatgtgcacataaaaaaatctaaacggACACAAAGCTTGCATTCAAGATGCGGCACAAAGCACCCAAAACATTCTTCAGTCACAGAAGGAAACACAGTCGCcatggaaaagaaagaataataacaaaacaaacagaagaaatacaatGAAGTTCCATGGCAATCGAATTTGTTTTATAAGATGTCATCAGATATTCAATACTACCAGTGTAACCATATTAGACATCTGTGAATGAGATGTTTATCAGTGGGATGCCTTAGAGGAAGCACATTTCAGTTATTGAATATTAAATCTAGCCGTTATATAAAAAGGCACACTCCTATGTACACCTGTCACTTTCCAGACATtgagcgaaaaaaaaaaaaaaaaagactgtcctattatataataaaagcaTGTGAGAAATTACATCTTTACAACAGAAATGCCTACATCTCCAATACATCTGGTTCATTCTACTGGTGTCTCCAAATTCAGAGTACTCAACATTGTCTGTGTACTCtcattgtaaatgaaaaacttACAATCTGGGTCCCTCTACAGGCCACTCTCAGAGCTGCAGAGGGTCAGAACCACAAACAACATGTAAAAGAGTTTGGTTCctcttcaaaataatttaattacagattttcttttgaaaagagAAGATCAACCGATTTCTGAAGACAATCCCAAGCGCAATAACTTTCATGCATTTGCTGATTACAACAGCTTGGACAACAGAGTCACTGTGTGTTCCCTGTGCTTTTCACATGGAAAGAGTAACAGAACTCCCAACATTGAAAAGTGCTTTaactttaatatttcaaaatggtgCATTGTGTATACATAATATTGTTAGAATAACGAACCCGGGCGGGGCCTTCTACTGTAgccattttgaaaacatgacCTTTTCAAACTTCATACATGCGTCAAAACAGACTTTTTActaaattactttatttctgtAGTAACCCACGTAAACACAGAGTATCCCAGTGTTGTCACTTGGATTATCACACCTCTATGCTTTATTAGCAGCTTCATAGGTTATCTATAACGGTTGTAAAAATGAAACGTCCAACATCTGTGATAGACTCAATGTTCCAATTGCGCTCATTAGGGACATGCATGCCGAGAATGAAAATAGAGTTTAGACTAAACTGAAAATAAGCTTTATACTTAAGTATAAACatcaaaaaatatgaatggacaCGGGGGGAGAATCTGCAacgaacaaataaaaaatacaacgCAATCACTGAACTagagagaaatgtaaaattcaTGTTTAACAGATTAACCTTTgtgtaaaaacatacatttacttCTGATGAGCagtttcagtttaataaaaagaGCAATTTGCTAGGAATGGGAAATTTGTAGTATTTGTAAAAGGCACTCTAAAGTTGTAGTATTCCTTGTTGCTGGTGCCAACCATCACTGATATGCAATTGAGAAAGACATAGTGCCTGTAACTGcattgtgtgactgtgtgctgCATTATACGTGTTGTGCTATACAGGACAGCAGGCAAATGTTTTAACTATGTGCACAAAAGATACCAGTCATTTCTAGGAAGAAAtactattaattttaaaatcgaTTTATTTTGCCAGCATTCTTTTTCTTATTAGATTTCATAGTGCAGACTTGTATCTTTAGGGTCACCTTtaaaaacaggattttttttaaaaaattttGAGCTACAAACTTTATGGatatttatcaaattattaaaaaaatattagttcCTGAAGttttaagcataagaaaattagttttttgagtgccttcataaaaaaaaaaagttacagcGTTTGGTGATAATTCACTTtagatatattatatacttagTAGTGCTTCTGTGGACAATACTGAATAACCAATCTCTCTTGacttttcttataaatatttcCATAAGGTTTCTCAGTACTAAAAATACTTtaccaaaattaaatgtttcagactcatttgttttttgtggggATATGCCCACATAATGTACATTTGGTTTCTTACAACAAAATGCACATCACTATAGAGAACTAGTTTGAGCCTGAATATAAAGAATGATTACAAGTGCaggataaaacaaatactactaTTTCAAGGGAAATACCATTTGTCATGAAGTAAAGTAACACACCGCTCTTTGGTTTTCATACAAAGAATAACAAAGAACCTGAGGGACTTGCTTAGAGGTCCTCCCATCTTTTCTGTAAATCAGTTTTATGCAAATTAGTACTTGTATTCATACATTAGTGTtggtttctttcattttttttaaacagatactTGCAGTAAAGGTGTCATGCAATTTTGCAAGTGAATAAGATGGTAATTCCAAAGGAACTATATTTATGTTCGTAAACTGGTACTCATAAGATTAATTTCTGAtagtttgttctttttataaatgtaactaATTCCATAAAGATTGACAAAAGTGGGATATTAACTGATGGGTTGCATTCTCcaaatgcaatataatgtaTGGAGCTGAATATCTATCCCCTAGAGAAAAAATTCAGTGCAGTTTAGCAAAATTCAGATTTTGCAACAATTGTTCTCAAACACCTTCAGCATCAACTGTGCATCAATTTTCTAGATCCTATAATCCCAGCGTCACTGTGGGATTAATTAAAAGTCTTATAAAGGCAATATTGCCTGAAATAATAACCACATAAAATGCTATAGAGGTGTgacctgtttaaataaaactttacTATAAAGATTAAatctcatatatatttttttcctccacaagGCATCTATATTTAACTATGAGTCCCATGTAAATTTGGGAGTCAAAATAGCAACTTTCTGATACCTTATAAATTCAGTAACATAAGTGATGATGGTAATTTAAATAGCAAATTGACTTACTTTTAGATTACGCTGTGAACATTTCTGACAATTTCTAGTTCACCCTTCAGTAACTGTTCAAAGTTCAAAAGCTGGAGAGACGTTTAGTAGAAGCTTCCAGTTATGGGCAGAAATCAAGCAAGACGAGGATCAGTTACAATACCAGACCACAGAGTGCCACCACATCTACGTACAGTGAAGGTGTCAAGAGGCAGAGCAGTGACCCACGAGAGACCTCTCCGCCTACACTGACCTTACCACCCATTCTCAAGACTGAAGCACCCCCTGCTCGGGCCACACTGTGTGCCCTGTGTTACTGGACGCAGCAGGAAGGGATCTCTGCACAGCAGCAGGCAAAGGAAGAGGAACCCATGGCTTTAGGAGGGATGAGATCCAGGTCCTCATCATCAGGGATCTCATCCAGTCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31882 True 3571 lncRNA 0.35 2 25252716 25256361

Neighbor

gene id symbol gene type direction distance location
AMCG00007667 pkm,kpyk coding downstream 245886 24989512 ~ 25006830 (-)
AMCG00007668 NA coding downstream 273379 24966872 ~ 24979337 (-)
AMCG00007666 NA coding downstream 306920 24934308 ~ 24945796 (-)
AMCG00007661 NA coding downstream 442249 24805791 ~ 24810467 (-)
AMCG00007662 cib1 coding downstream 450338 24799840 ~ 24802378 (-)
AMCG00007677 NA coding upstream 66727 25323088 ~ 25334806 (-)
AMCG00007678 NA coding upstream 83001 25339362 ~ 25355884 (-)
AMCG00007679 NA coding upstream 103418 25359779 ~ 25362397 (-)
AMCG00007675 chrna5,LOC106587222,LOC108440259,LOC106562132 coding upstream 108676 25365037 ~ 25380395 (-)
AMCG00007676 LOC106587228 coding upstream 133828 25390189 ~ 25454403 (-)
G25415 LOC108275329,LOC103046663,LOC108436939,LOC105912564,LOC107696286,LOC103375935,LOC106584709,LOC104942717,LOC107753195 non-coding downstream 5337 25207774 ~ 25247379 (-)
G25387 NA non-coding downstream 263662 24988845 ~ 24989054 (-)
G25375 NA non-coding downstream 270577 24981934 ~ 24982139 (-)
G25248 NA non-coding downstream 710558 24498365 ~ 24542158 (-)
G25239 NA non-coding downstream 744897 24433080 ~ 24507819 (-)
G25446 NA non-coding upstream 195402 25451763 ~ 25452022 (-)
G25615 NA non-coding upstream 1742945 26999306 ~ 26999546 (-)
G25617 NA non-coding upstream 1772610 27028971 ~ 27029294 (-)
G25620 NA non-coding upstream 1813525 27069886 ~ 27070099 (-)
G25655 NA non-coding upstream 1997868 27254229 ~ 27257033 (-)
AMCG00007637 NA other downstream 971152 24262690 ~ 24281564 (-)
G25026 NA other downstream 1280051 23971671 ~ 23972665 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other downstream 1832413 23406928 ~ 23420303 (-)
AMCG00007572 LOC107703942,LOC103366351,LOC107665298,LOC107726337 other downstream 2676262 22561496 ~ 22576454 (-)
AMCG00007565 gatm other downstream 2894270 22340599 ~ 22358446 (-)
G25422 NA other upstream 7971 25264332 ~ 25264951 (-)
AMCG00007684 shf,LOC108430988 other upstream 374431 25630792 ~ 25631592 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other upstream 797403 26053764 ~ 26070848 (-)
AMCG00007704 NA other upstream 2101370 27357731 ~ 27370519 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other upstream 3638332 28894693 ~ 28921123 (-)

Expression


Co-expression Network