G25562


Basic Information

Item Value
gene id G25562
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 26136767 ~ 26142288 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU32052
TGGCAACACGCCAAAAGATATACATAAGCTATGAGAGCTCTTCTCCATGTTGTGGGTCTGTTATAATGTAAACCCCAAAGAAGCACACTTCAGTCTTATAGCTCCTTCTGGGTCGTGGTCAACAACAGTTATGCACCTTGACACATTGCACATTGACAAACTAGTGAATAACAGATGGAGAACTGTTAGTTTTACTAGTAGACTCCCCAGCCAAATTCCTAATCAGTAGTTGTTGACCTTTTTCCTGTTATAATGgaggtgggaaaaaaaatactgtacagaTTCTTATGTGCAAAACTTCTCTCCCCAAGGTGCTGAAAAGCTCATGTACAAAGCTCACTGTCTATGTACTGAGCGCTCAAATATAAAGCATCAAATGTGACATGTTcaaaagaagaaatagaaaaaaagaaaatctgatgcatttttgtATCCCAAAGGTTTTTTTTCTGGCTAAGAGCTCTCCCATATTAGCTCacagctttaaaatacaaacagcaAAGCTTGTTTAGAAATGGCACTAATGTGGTCTTCCCTGCCTTTTAGGCAGTCTTGTACATCTGGTACTAgtgatatatactgtatatgtattatcaTACCTTCAAATATTGACTCTCCAACAATGGACAGCCCCAGTGCATTCCACACATGTGTGACTCCTCAGATATAGTAGTAACAGCAGTAGCCCAGGACCTCATTTTTAGACTCACCCATAGAcctgaatttgaaatgtattattagaaaAGATTAAATCAAGTACAAGAGAACTAAGTGAGGCTGGGTGTGAATGGTAGCTACTTGTTTTCAAGACTATCACCACATGATAAcccatatattttacattttaaaattgacaaaagtTCTGCTTATTTCGAGCACATTCCTGACCAAATTCAGTCCATCTCATACCAGCCAGTTGCAGCTCAGCCTTGTGAGGACACACTGAGATGAAAAGCTCAGTCTGATAGATCTGCATGCAGGAGGAGTCCATGGACAACCCTGGCTGTTACTAGTAGCCTTTTATCACCGCATGTGTCCTATCCAGCATCATCATTTTGCAGCGGTTGGCAATCTGTAGCACATTCTGCtcactttctgtttctttctttttctctaaaacaaaatataatatagccaAAACACTAAGTGTTAAATATTACCAAATAAGACACAATAACTTCCTAATGTTTGGAGAAATGCAGACATTCACAGAGTATTGATTTGCTCTTGGGTGGGTAAACACCCTTTGTGCACTAGAAGCCTCTAGTTAAGAAAGCAGTTTAGAAAACTTACAGGATGAACTACAAGTCTGGAGGATTGGTGTGGCCTTAAGTGGCTGGCTGCAGTAAGTAACACTAGTTGTAGGAGGTGCGGCTGAGTGGTAAGGGGTGACAAGACAGTGGTACACATCTAGTAACCCAAGGCCATCAGATCTAGTGGTTacaacacatttgtgttttaaaatagtcAATAATCTCATTACAATCAATGAGGTGAGTGATGGAACGGCTAACAGAAAGCTAATTGCTTATGTGCTTTCTGGGTACCTTATGCTCGAATACAAACAAAGTCAATTAACCCAAGATCTTGCATATTCATAATAGAACTGTAATGTATTCTATCCTGACCAACAAAGGAAAAATGGCAAATCTAGTTTCTGAAatacctttttgtttgtttttgccgaGCAGCAACAAATTCCAAGCTTTATGTCCAAAAGGCTTGGTTACGAACTCCGTTGAGGAGTGGTTTTACTAGCTGTGCCAACTTCCTCAGTCCAAACCACCTAAAGATAGAAGAAATCAAAACCAGGCAGTCCCTGAAACACATGTCCTAAGTGGCCATTATCTGTGTATATTCATCCTGACACCTCGCTGCATTAAACAGACACCTTCCTGCGGTTTTCTCGAAAGTGACCCTGGCCCCACTTATCCTCCTCAAATGAGAGGCATGTGCGTGGCATTACATGTCAATATGTGCCAAAAGGAAggaggggaaaagaaaacaccaAAGTTGCATATAGTAATATAAAGTACATACAAGATCAATACTGTCATTTACaaagttaaaacatttacaataattgcACATGTATCCAAATTAGGAGGAGTTGTACCCCATCCCCACTCACTCATTGGTACGAGCATCAGACGGAGGAGCTGTTCTGACCCAAAATAGACACCTGCTTTCAATCAAAACTTCCAAACTCTGTCGGAGATCTAGGCCCACAGCATGCAAACCATTGTCATAGCAATTCATATAAGGCAATTctcttgatttaatttagagGAAAGATTGATGCGTAGTATTTGAGAAAGGCTTTACTGCCTTGTGGCTTTATTGTTTGTGTATACTATTATAATAAGGGCACTTCAGTTTTTCAATGCTAATTAAAACTCTTGTTTACCTGATGTCTGTTGATTGCCACTTTAAAatcaggagaaagaaaaaatttGAGGGTCAAACAACcagatttcatttttcagtAATTATAGTGATAATTCAGCTTGAAAATAAAGGTGATCTTTGGTTATTTATCAATCTCTTCCTATTCTAGAGAAGAGTTAAACAAGGATGATGAAATAATTAAGTTAATCCTGcattaatagaaaatgtatgaatgcTGGTCTGGTAAGAACAAATTgatatattaacaatatatattaaaaatataattatgggCAGGCAAGTAAAGATTACTTTACTTTAAACAAAGTGATGATAAAAGTTCTACATCCATCATTaggttattatgattattttaataccGAACCACAGATCGGTACGTTTAAGATGTGCATAACGTAACCTTAATAAACACTATGGTTCACTATAGACAGGTCAAAATCCTTTCTGATGTCTCAGCATCTTAACCAgactcaattaaaataattaaacggTGACACGCTTGTGGCATAATTCTTCTTGAATCTAATTCATACTTTTTAAGATTTCAATAATTTGTCCAGCCTACCGAGACAGATTACATGCAGGAACCATTGTACATTCATTCAGCTGATCGTATTTCTTCACCGGTgtgcatttatttcctttcagaaaACATATCGATTTATGCagcttttttaaagaaaatgttttgagcTCTAGACATTCTGAATAGAAATCTTCAAATGCATAGCCTATTACTTGAATCTGCTTGAGAGGACATTTCTGGTCAGAACAGCTCAGCTCATGCCAAGCCCAAGGACAAACTGAACACTGGGGAAGAATGGGGAAACTATTAGTGAGATTATGTGCGCTGCCCTCCCAATTTAGACATTTATGATAATATGGATTAAGCCATAACCATTTCCCATTCCCCAAGTTCCCCATTTAAATGAAAGCTTTCATATGAAGTTACAGCTTTgcttgtattatgttttttctttaaacatagGTGTTGAATAGATGGAGGATTCTGGAACTAGTTAAGCTTTGTAAAGTGAAATACAATGGCCTGAAAAGGCAAGATTGTTCATGCCACAATACCAGAGAAATAATGAAGAGAAAAACTAATGGTAAACCAAAAACAGCGCAATAGAGTGAGGGCTGTATTCATGCAGGCTAATGGACTGCACATTTTAGTTGTGTTGTACAaccccccttttctttttcaagtttAAATCGAAGTATGTGGTTCCCTGAGAGCTGCAGAGTCATCTTCTTTCTGTTCTGAACTAagatcttaattacttaattgggcTAATTATTTCCTCAATTGgacattgaatatattttcaagaTCTCCAGAAGTAAATGCACTTGATTTTAACTGTACCTAAATAATCATTTTGAGGTCTGGAGAGAAGCATTAATTTGTCCAATGAATCAAATAATTACACCAGTTAAGTAACTGAAACCCCAGAGACTCTGTCGCTGTCTAGGATCTGGGTTTGAGACTTCTGTGAAGTATCAtttagcaaatgtatttttcattggtTAAGGAAACTAAGTAATACTAGGGAATTACTCTTACTTTTTCAATACAGCCCAAAAAGCTATGCATTGAAAGAGAGATGAAGAAATGTGGTGGGTGATGTTTTTCCAGACAGTTTTCCCATTtttatgaaggaaaaaataattttggtGGCTTAGACCATTGGTAAAAGTAAAATCACTTGGGTCCACTGCAAAATGTCCTACTATGTCTagaagtttgtttgatttgcatGGTCATTGTGTGAGGTGGGCAGCAGGAGTGTGAAGGCAGGGAACAAGTGACTGAGTTCAGTgatgttgctgctgcttttgcTGCTGCAGGATCTTGACAACACGACTCAGAGAGTCTGTGGTGGCGAAGGCCAGGTACTGACAACACAGCCAGTCCTCCAGGCTCACACCACAGCCAGCATCTAGTTGCCTCTCTGTGGCCCGGCCCAGGACTGGCACTCAGAGACTGGAAGAGGTCCTCTCTCGGACCCCACAACAGACACTGCAGGCAGGCCCGTGCATCTGTGATCTGTATGCGCTCAGAGGGGTTGGCATTGAGCAGTAAGCTGGCCAGCTGCTGTAGGCCCTGGGAGTACAAGGAACGGGAGGGTAGCGGAGGCAAGTCTGCCCGGGTGTACTCTTTCTCCTTCAGCTCGGGGGTCTCCTCGAAGGGATTCGGCTGGTGAAGCATTTCGTAGATGAGAATCCCTGTCTGGAACTCATCACACTTCTTGTACTGTGTTGCCGTGATGATCTCTGGAGCCAGCCTGCACTGATCCTTCAAGACCTCAGGGTCCACCAGCTGGCTCTTCTGCTTGGCTTGGGAGAAGTTGCTGATTATAAGCCGGGCAGGGCAGGCTGAGTTGGCAGCAGAAGTGACCATGCCAACTccactgctgctgttgttattgGGCTCCAGCACATCCAAGTTCCAGGGGTTTCCTGGTTGGCACTGCACTAGGAGCAGGTTCTCCAGCCGCAGATCACAGTGAGTCACATGGTAGGGCTTCATGTGCTCGAGGCCCGAGCAGAGCTGCAGCAGGAGGAGACAAACCTGACGTTCGTAGAGGTCTGGGTTCCTCTCGTGCCGTGACACCCCCTCCCTCACAAAGTCTGCCACGGTTTGGTAGGGCACCTCCCGGGTGATCACAACTACACGGCTGCGCAGTTTTCCACAGGTCCCAGTGCCACCTGGGTGTCCTGTGGCTTTTGAACTGTGGCTTGGATTCTTGGGCTCTGTTGGTTTTTCGATCTTCTTTTTGATCTTTGTGCCCTGCTCCTCTGCTTctttttcatcctcctcctcctcctcttcctcaggaGTGCTAGGGTCTTCCCAGGGCAGGAGACGGACTGGCACATCAGCCAGGAAGTGGCCACAGTCCTGCTGGATGTTGAATTGTACAGCCAGGCTCTGTCTCACAGCCAGACTGTGGAAAAACTGCTGCTGCGTCTCCTTGACTTTGCTTTTGCAGATCTGTAAGTGAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32052 True 5420 lncRNA 0.42 3 26136767 26142288

Neighbor

gene id symbol gene type direction distance location
AMCG00007692 NA coding upstream 5757 26118096 ~ 26131010 (+)
AMCG00007690 LOC107583870,LOC107742881 coding upstream 21159 26096726 ~ 26115608 (+)
AMCG00007691 ppcdc coding upstream 53346 26070759 ~ 26083421 (+)
AMCG00007686 loxl1 coding upstream 100403 26019814 ~ 26036364 (+)
AMCG00007685 NA coding upstream 428629 25698223 ~ 25708138 (+)
AMCG00007696 NA coding downstream 1017203 27159491 ~ 27179372 (+)
AMCG00007698 NA coding downstream 1072482 27214770 ~ 27226777 (+)
AMCG00007697 ptpn9,ptpn9a,LOC106573036 coding downstream 1093706 27235994 ~ 27253888 (+)
AMCG00007700 sin3a coding downstream 1120217 27262505 ~ 27280545 (+)
AMCG00007701 wdr61 coding downstream 1175251 27317539 ~ 27324818 (+)
G25561 NA non-coding upstream 2190 26134361 ~ 26134577 (+)
G25531 NA non-coding upstream 75521 26053701 ~ 26061246 (+)
G25445 NA non-coding upstream 684974 25451533 ~ 25451793 (+)
G25405 NA non-coding upstream 815742 25315787 ~ 25321025 (+)
G25367 NA non-coding upstream 1183439 24953125 ~ 24953328 (+)
G25574 NA non-coding downstream 120539 26262827 ~ 26270720 (+)
G25588 NA non-coding downstream 171075 26313363 ~ 26313565 (+)
G25631 NA non-coding downstream 1048881 27191169 ~ 27191379 (+)
G25645 NA non-coding downstream 1111813 27254101 ~ 27256998 (+)
G25658 NA non-coding downstream 1138369 27280657 ~ 27282110 (+)
AMCG00007640 NA other upstream 1637117 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 1942286 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 2466688 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 2943246 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 2997246 23133811 ~ 23139521 (+)
G25822 NA other downstream 1941534 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 2296356 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 2539883 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 2757770 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 2860807 29003095 ~ 29006379 (+)

Expression


Co-expression Network