G25655


Basic Information

Item Value
gene id G25655
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27254229 ~ 27257033 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU32167
ggaatgttttaatataaaagtataaacaCTTTGATGTGCATATTTATACtgctttattgaaataaaaataaatagtacattACATTGCACTGTAGAACAGAAATATATCAATAGTTggataaaaatacatgtaataatattgatgacaataaatacagcaaagcAGGCTGTCATAGGTCCAAGAGCCGTTGTGTATATAGGCTGTCTGTATATACGCATCTAGACAAATATATAAGTAAGTAGAAAGACTGATGCATGAGGTACCAGGTTTGGTTTTCCATCGTATCTCTCATTTTCTGCTTAAAGAGCTAAAGTCAAAGTGTTATTTCCATCTCCAACAACGTAGTAACCTATACATGGTTCTAGGTATTGTTAAAGGTTTGAAGGAATGTCACAGTTGGTTTTGAAAACATACAATGTCAATCAAACAACTCCAGTTTTCAAGGGCTCCAGCTTTAAATGGACCACAATACAAAGTTTTACAGTTTCAGTTGTTCATTAGTGCAAGTGAATCAATTCAGAAAGATCAGTAATTCCTTGACTCCTCCACCTACTATTCAATATTCAGCATACTACTCTGGAATCCATATTAGTTAAATACCCTTAAACCTAAAGTGTCCACACACTGCTTTATTACACTGCACAGTGTCACACAAAAATTACCCAGATCTCAGGTTTGACTCCAATCCCAGTTGAGTTTCTGGTCTTGCTGGTTGACAATGTAGGTTTTAGCTCCATAGAAAACCAAAAGAAACTAGTTGACAATCACAAAAGTGTGCAATGAAGaagacacacattcacacacttgTTGGCAGTTGGTTCCTTTTAATATTCTAGAAGATATCACACCTGTGTGTCTGAAGATGGCTTTACACTTCCCTCATGCAGTGTCAATTTTGAGTCAAGTCACTTACCAACAACAGTCTAAAGTATGGATTGGGCCTTTTAAACTACACTTCTGAGTTTGGGATCTTATCAAGACCTTGTTcatctttttgtgtgttgtgtacaaacacacacacaattactaTGAAAACAGACATGTACAGCATTTGACAGTGAACCAGAAGCCCACTTTGTATAAGAAACCATGGGTCAAAGATCACTTCGGATGAGTATTTGCATTTCCATTCCAGAGGGTTTTAAGGGGTACAAGCTCTCCTTGGAGCAAATGAGGAAGGGATGCTGCTGTACATTCTGCTGTTTTGGAAGAGAtcaggtttttaatttgcattgcaatGCATTTACATTCTTATGGTCTTCCTTTCTAAAATGAAGGAGACAAGATCAAAAAGTATagtttgcccccccccccaaaaaaatgagTTTCcatttagttaaaataaaacaatacacacttTTCCCACAAAGAACAGAGATATCTGAGGCAGTTATGTAAGGCTGTGCTTGTACAGTAAGCTGAGGGTTGGAAAAAAGTCAGCCCAAGGTTAAATTCAAACTGTTCCTTACAACATTCCAGCAAATTTGGAAAAAcagtattcaaaatgttttaaacaaccCTAATCCCCACATTTGATACCCAAAACGTCTTTTGGAGTTTACCTTATGTAAAACACTAAAAATCAAGCTTCTTTTTGTGCCATATTTTACTGTACATCGATATACTGAAATTCCATTAGATGCATTCTTAGCCCTATGCAGTCATGTAATAATGCAGTAGgatttaaagcattttgattTTCAATGAATGGATACAATGACGCAGTGGTGACTCAGTCTTAAACAGAGTTTGCAAGGGGGATTTGATGCAAGTATTCAAAATCCTCAATGCAAAAATACTTCAAGCTCAACTAAATAAGGTCACAAGCAGATATTAAGAGCAGGAGCATTGAAGTCTGAAAACAAGTCCCTTCTTGACAGAGTCTAAGCAGCATGGAACACACTACCCCACCATGTAGTTGTAGCTTACTGTCTTGCTTCCTTCAAGAAATAGATGGATGAAATCCTGGGATCAATTAGCTACGAGCAAAGAAAGTAGCAAGATGGGTGTAATGGGTGTAATGGGCCACTGTCATTGGTTATATTTTGTCATGGAAACAAGTGAACCACTAATCAGAGCTTCTGGGTTCTATTAGTCTATCAAAGCAATACAACCATTATTTTAAGTACTAAGCAGATTGAAGGAAAAAATGTGTTGGtgagaaaaataattagctTTGCATTAGATGTTGGAAAAACATGGATTCATTAAATATGGTACATGACATGAATACAAACCTAGGTCACTTTGACATAAAAAGGGTAACAGTAAAACCTGTGGTCTGTGTAATGGGCCAAACACCTtgagtgataaaaaaaaaaaaaaaaaaatctgttgccACTTACTGCATTCATCAGATAGTACAGCAACTGTACATGTATACACCATCTAAATGTACCACTGAGTAACTACACGGTACATGAAATACATGTGAAGACATCTAACTGCATTAAATTTGCTGATTTTAATGGTTAAAAAAGGTTTGTATAAACATGGTATGACTGTCTTATTAAGCTTTAAAGACTTTTACATAACTTTGGTTTTCCTTCACTGTTTAAAgacttcatttaaatgtatcaaacgTAGTCTAGtctaaatgattaaaaaaaattaagtcaAACCACAAGAAAGGAAACCTTAAAGCTTAACAAACAGAGCTAGGCATTGTCAAGTTATCTACAgtagttaattttttttgtaataattatgcTAAAAGAAACTTAGTTatatcttaattaaaatataatttaaaataagtacaattaaaatatgaataattgtaaagaaataaaatggataAAAAT

Function

GO:

id name namespace
GO:0005539 glycosaminoglycan binding molecular_function
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32167 True 2805 lncRNA 0.35 1 27254229 27257033

Neighbor

gene id symbol gene type direction distance location
AMCG00007699 snx33 coding downstream 41465 27199643 ~ 27212764 (-)
AMCG00007695 LOC107560004,LOC107562294,LOC107727415,LOC107673268 coding downstream 773351 26479031 ~ 26480878 (-)
AMCG00007694 hmg20a,LOC102798875 coding downstream 981779 26262988 ~ 26272450 (-)
AMCG00007693 NA coding downstream 1092715 26136652 ~ 26161514 (-)
AMCG00007688 NA coding downstream 1358628 25863022 ~ 25895601 (-)
AMCG00007706 crabp1,crabp1a,LOC105895658 coding upstream 36394 27293427 ~ 27307131 (-)
AMCG00007705 s2544,LOC108438536 coding upstream 67668 27324701 ~ 27334387 (-)
AMCG00007713 NA coding upstream 261505 27518538 ~ 27532721 (-)
AMCG00007712 NA coding upstream 309134 27566167 ~ 27569541 (-)
AMCG00007719 NA coding upstream 410488 27667521 ~ 27672745 (-)
G25620 NA non-coding downstream 184130 27069886 ~ 27070099 (-)
G25617 NA non-coding downstream 224935 27028971 ~ 27029294 (-)
G25615 NA non-coding downstream 254683 26999306 ~ 26999546 (-)
G25446 NA non-coding downstream 1802207 25451763 ~ 25452022 (-)
G25421 NA non-coding downstream 1997868 25252716 ~ 25256361 (-)
G25697 NA non-coding upstream 96935 27353968 ~ 27355254 (-)
G25726 NA non-coding upstream 172724 27429757 ~ 27540936 (-)
G25730 NA non-coding upstream 180975 27438008 ~ 27451511 (-)
G25735 NA non-coding upstream 243917 27500950 ~ 27504962 (-)
G25746 NA non-coding upstream 296464 27553497 ~ 27554110 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other downstream 1183381 26053764 ~ 26070848 (-)
AMCG00007684 shf,LOC108430988 other downstream 1622637 25630792 ~ 25631592 (-)
G25422 NA other downstream 1989278 25264332 ~ 25264951 (-)
AMCG00007637 NA other downstream 2972665 24262690 ~ 24281564 (-)
G25026 NA other downstream 3281564 23971671 ~ 23972665 (-)
AMCG00007704 NA other upstream 100698 27357731 ~ 27370519 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other upstream 1637660 28894693 ~ 28921123 (-)
AMCG00007768 NA other upstream 1744016 29001049 ~ 29013947 (-)
AMCG00007817 NA other upstream 3934977 31192010 ~ 31246649 (-)
AMCG00007822 NA other upstream 4081683 31338716 ~ 31342792 (-)

Expression


Co-expression Network