G25658


Basic Information

Item Value
gene id G25658
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27280657 ~ 27282110 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU32170
TGtggaattaaaagaaatgtagtgcagcatttcttgtaaaataacaaaagtcaGGCCACCCATTGAGGTTTCTGGCCACTATGTAAAATTGTATATCTTGTGAAATGTCAGATTTATgacactataaatatatataaatatatatcacaatCGCAACCAAGCCCTGGCCGCCCTGGTACAGTACCTACGAAGTTGCTGGCAATGCCCAATGCCAATACACCAGCTTTTACACACAAACCAAGAACAATGAGAATGGACTACCCACACACTGCTTacagttttgtaaataatatgtatatagtgtcaaaccttttttttattacagagaTCTGCGTTGATGTGCTAGCATACTTTACAAGCTTACTGTGTACTTTAGTGAGAGGTGGCTTAAAGGTAGtacttataaaaaaacaaaagaaaaacaaacaaaaaaaaaatagcaagtttattacagtttttaccAAAGGAAGTTGATTTATAATgatagtttttcttgttttccttttttgtgtgtttttgtttttttaagctaaagaaatgttaatttgaTAGTAGAAATATATCCAGGATTTttgaacaatattttttatatcattaaaacaaaaaaagaacaaaaatgtttttgtgactAATTGTCCAAACTCTTCAAATTGTGAGGTAAGAGTTTGGCCTTTATTTCATGCTAAACTGTCACTGCCGGTTTGGATGTATTGAACATATTTGACAGAACAGATACTAATGAAATATCAGGCTCCAGGTGTACAGAAATTCTTTCTTTAAAAGACCATTCAGCACTGGAAAAGTTATACTTTTCTATAGCACCCTCTTGTGTATAGTCTTTCTATGTTGTTAAAATATGGGATTGAACAATGGCCTCTCATTTAAGAAACCCTGGATACATTTCTGCTATGAATAttcatctgcatttttaaaggagaaaaaaagagaaactgcaAAATGTCACCGCATGATTTTTCTGTGGATCATCATGGCCCCtttatttcaactttatttaaaaaataataaaaaaataaataaaattgaaatttgtagCAGATGGACCTAATATCTTTGGCAAGGTCTCCAGATCCCAGGCTGGTCAAACCCTATTCATCAGGGGTAGGCAATTGTTGAGGGGTATAGTTCATCTACCTCTTCAGgacaaacacacatactgtGAACTCCTTATTGTAGAATAAGTGTAGGGATGCAGTTATGCAAATACCTTtgaacaagacaaaaaaagagtGTTGTGTGTTACTGATCTTACCTgatgtacattttgtaagtgCTGCATAGgttctaattttaaatgcagtcaTACTGGTGAAGGAATTCTAGATGCTAGATTTGTTTGAATTACATCCCTTAAATTACTTCTGATCTCACTTTTCCACATTAAAGTTGTCTTTACAAGTTGAATGGCTTGGTAACTAATCCTGGTTCTAATAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32170 True 1454 lncRNA 0.33 1 27280657 27282110

Neighbor

gene id symbol gene type direction distance location
AMCG00007700 sin3a coding upstream 112 27262505 ~ 27280545 (+)
AMCG00007697 ptpn9,ptpn9a,LOC106573036 coding upstream 26769 27235994 ~ 27253888 (+)
AMCG00007698 NA coding upstream 53880 27214770 ~ 27226777 (+)
AMCG00007696 NA coding upstream 101285 27159491 ~ 27179372 (+)
AMCG00007692 NA coding upstream 1149647 26118096 ~ 26131010 (+)
AMCG00007701 wdr61 coding downstream 35429 27317539 ~ 27324818 (+)
AMCG00007702 NA coding downstream 52815 27334925 ~ 27348351 (+)
AMCG00007703 psma4,LOC107738663,LOC107680153 coding downstream 69113 27351223 ~ 27355475 (+)
AMCG00007707 rbpms2,LOC107086560,LOC103368877 coding downstream 147792 27429902 ~ 27448438 (+)
AMCG00007708 ap3b2 coding downstream 195901 27478011 ~ 27504969 (+)
G25645 NA non-coding upstream 23659 27254101 ~ 27256998 (+)
G25631 NA non-coding upstream 89278 27191169 ~ 27191379 (+)
G25588 NA non-coding upstream 967092 26313363 ~ 26313565 (+)
G25574 NA non-coding upstream 1009937 26262827 ~ 26270720 (+)
G25562 NA non-coding upstream 1138369 26136767 ~ 26142288 (+)
G25674 NA non-coding downstream 21738 27303848 ~ 27307066 (+)
G25677 slc25a44,s2544,LOC108438536,LOC108432728,LOC107673271 non-coding downstream 46837 27328947 ~ 27330202 (+)
G25699 NA non-coding downstream 73764 27355874 ~ 27356077 (+)
G25709 ppib,LOC102792920,LOC107680152,LOC107577199,LOC107754356,LOC107673286 non-coding downstream 284585 27566695 ~ 27569353 (+)
G25753 NA non-coding downstream 288433 27570543 ~ 27571491 (+)
AMCG00007640 NA other upstream 2781007 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 3086176 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 3610578 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 4087136 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 4141136 23133811 ~ 23139521 (+)
G25822 NA other downstream 801712 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 1156534 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 1400061 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 1617948 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 1720985 29003095 ~ 29006379 (+)

Expression


Co-expression Network