G25730


Basic Information

Item Value
gene id G25730
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27438008 ~ 27451511 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU32264
AAAGGATATAACCAAGTTTATTTATAAGCCTGTTGAGTGAAAGATAATGAAACCTGATGTTATAGTTGTTTTCTTAATGGCTAACattatttttagaatatataGTGATTCTCATTCAGTGAAGCAgtgtatatttgtaatacaGTCATCCATTATATCACAACCATGTTTTCTTCTCCCataccatttatttttgctgtgtaCCTGTAAGAACTTTTGCCTGTAGTGCTTTCATTATACATGGGGTCAGTTTTGTCTGTCGCTATGGTGCAAattccacaaaaacaaaacaagtaaattatgtataaattaaaccatttacagcAGCAAACTGCTTGCATCTGAATCGTCAGGcaaatgacttcaattaagcCCTGCTGATTTAAATGGGCTCTGACAGCTTGCAGGGAACAACCACAAATATTTTATCAGACACTTTAATTAGGCAGCTGGCCCCATTGAAAATGGGGGCTTTAAGGAGTCTCTGAATGGGGTTTGCGCCTGGCTGAGCAGGAATGTTTCAGTGTCTCAGAGGGCAGTGAGTACCGGCCAACCCTActgttaatgcaaaagccaCTCATGCAGAAATGATAGGGatgtataattaataatcacatatttaatcattaatttgGTCAGGGAGCAGGGCTTTTACTTTGCAGGGGAAGTGCTCAATGGAGAAGAAACAGCCATTTTGCCACATAGCAGAGGGTTCTACAGCATCCTGCTTTTAGaccacatttcaaaatacatctcTCTCAAGGTACAGCAGGGGGTAAGAAATTCCATTGGCTATCCCACAGACTGGAGTCTGGTATGTTGAATTAAAAACCCAGATTTCCCTGTTGTAATTATCATGATTCAGATATTGTAAACCATAGCTCGTTTGCCTTTAGATTTCAAATTTCTAGGAGATATGTGCTGCAGAAGGGTAATACTCACTTTTCTATTACAAACACTGACCCTTTTTAAGTCAATGAAGAATGCCAAAGGAAGTAGGTTAATGATAAAAAGCTACCAATACAAAGTGAAAGCAGTGGAAGGGAGATGGCACTAGATACAATGCGGCACCCCCACGTGTCTAAAGGTAGTTCAAGGTTTTTCTGAAGGAATACCAAATTGCCCATTTTGAAGCTGACCACCTAGACCTCGCACCCGTTTGAACTTCACAAACCTTTAGCATCTAATACTAGCCCTCACTGGTAAATGAAAACTGTTTTACATTGGTTGAGTAGGTTTAGATTGTTCTGTATGCATTTGATGAATTAGTAACTTCAGACTGCTTGTGTGAATATTAATGTAGCACAAATGGTGAAAAGCCCTCAAAAGCCAGTGACAAACACCATTGTGAAATCACAATAACTCCTTAGAAAACAtacaacacattacatttgcaaaaactTCTATTCTTCATTACTCATCAGAAACAAATGTAGGGATCCTTTTATATATGCAGTTGACccttaatacaatataaatattttatataaaacttgCCTGCACATGCTGAAGAAAAGGTGACTTGAGGTTTGCCTTGCTATAAATCAATAAGGTTAGGAGTCATTAAACTTATGCCAGGCACAGCCCTCTGAGACCTGATGTGAAAATCCAAAGATTTTACTGGAGGGCTGGATTTAAACTCAGAATTTCAGAAGTCGAGGTAGAACCTTTCTGATCTATCATGACCTTCCATGATAGGCTAAACATATGATGGAGCATAGTTCATAGTTGAAGTAGAAACCGGTTTCGAGTTTTTAAACTCCACTGGCAGAATGTAGAATGGGCAGGTGCAGCAGGGTTCCTGAGCAACACAAGGGAGCCCCAGCACTGTAATTGGTCCGATCATTGAAATTTCCTGTCAGTGAGAGGTGACTGAGCTTGCAGGGTAGCAAGTACAGCAGGGTGACGACAGAAGGGCATCACATGACTGTTCCAAGAAGGAAGCAGAGGTCAGTGCACACCTGAAACCAAGACTTGTACATATAGTTAAATGCTCAAGCACAAAGTCAGCACAAGGTTTTTGCAACCATCTATTCTCAGTCATAGCTGGCTTCCTTTACCAACTTTGAGACTATACATCACCATTAGCTGTAAATGAAGACTTAAAGCCCCCCTTTTTCTTACTCTTCAGTGGAAGAAAGCAAAAGCTGTCAAATataagtttaaacattttttccaATTAACTCCTTTTGTAGGGGATTTATATGAATAAAACCCTCAGCCTTTCAGTGACCTACATTTGACAAGCAGATTTTGGCCATTTTCAAGTTATTAAAACTTAACCAAGATGTAAATGTTAGAACAAAGCAAAGGCAAATTCCAGGAGGTCGTTAAGTACACGTGTAGAAACTGGGAGCTTGTAAAATATGCAATCATCTTCCGAAGCAGATTTAGACCAAACTGAGCGAGAATGAGGCCTTTGTTATGCCTTCTAATCAAAGTGTTGCTCCAGAGACAGGTCTGGTTAGGAAGTCTAAGGGCTCAGAACAAAGCTGATAAAGATGGTTTTGAAAATACGGAGTAAAAATCTTTTGGCAAATAAGATCAGAACTTGAGTACACAACAGAACACAGGATTCTGGGTTGCTTCCAGACCATCTTGCTTATAGCACAATGAGGCTCTCACTTTGAAATTAGTGCTgggatagacatttgaaaactactgggtgtatttttttttttttttttttaaaaggaatttaaaatacagcattagCCATGTTAGGTGTTGCATTGAGATCTCAATATGGGCAAGCTTGAATGCAGTTAAGCTAAATTAAATCAGAACAGTCAAACCATATTAGCTATACTTCCTCCACATGGCAGCCATTTGATTAACCTAGATGTGTAAAAGATGTATAACTTTTCGCTAAAGCTCCAGATGGAATTTTCAATTAAAAGGGTACTTTGTGCATCCAAGCAGTTTGTTCAACTGGAATGTTGAAGAATCCACTACCTTAGAGTGGATCTCTTGAACATCAGATTTTTCACTTTCAGCTGTGGAGGGGCTGCTCTCAAATTCAGAGCAAGCCATGTCTCCCTTCTCTACGTTGGAAACTATGCTCTCCAcactcaaatgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaca

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)

RNA

RNA id representative length rna type GC content exon number start site end site
TU32264 True 3109 lncRNA 0.38 2 27438008 27451511

Neighbor

gene id symbol gene type direction distance location
AMCG00007705 s2544,LOC108438536 coding downstream 103621 27324701 ~ 27334387 (-)
AMCG00007706 crabp1,crabp1a,LOC105895658 coding downstream 130877 27293427 ~ 27307131 (-)
AMCG00007699 snx33 coding downstream 225244 27199643 ~ 27212764 (-)
AMCG00007695 LOC107560004,LOC107562294,LOC107727415,LOC107673268 coding downstream 957130 26479031 ~ 26480878 (-)
AMCG00007694 hmg20a,LOC102798875 coding downstream 1165558 26262988 ~ 26272450 (-)
AMCG00007713 NA coding upstream 67027 27518538 ~ 27532721 (-)
AMCG00007712 NA coding upstream 114656 27566167 ~ 27569541 (-)
AMCG00007719 NA coding upstream 216010 27667521 ~ 27672745 (-)
AMCG00007722 LOC106562765 coding upstream 421752 27873263 ~ 27879135 (-)
AMCG00007724 NA coding upstream 427749 27879260 ~ 27884397 (-)
G25697 NA non-coding downstream 82754 27353968 ~ 27355254 (-)
G25655 NA non-coding downstream 180975 27254229 ~ 27257033 (-)
G25620 NA non-coding downstream 367909 27069886 ~ 27070099 (-)
G25617 NA non-coding downstream 408714 27028971 ~ 27029294 (-)
G25615 NA non-coding downstream 438462 26999306 ~ 26999546 (-)
G25735 NA non-coding upstream 49439 27500950 ~ 27504962 (-)
G25746 NA non-coding upstream 101986 27553497 ~ 27554110 (-)
G25748 NA non-coding upstream 111217 27562728 ~ 27563018 (-)
G25749 NA non-coding upstream 111729 27563240 ~ 27563690 (-)
G25750 NA non-coding upstream 112528 27564039 ~ 27564709 (-)
AMCG00007704 NA other downstream 67489 27357731 ~ 27370519 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other downstream 1367160 26053764 ~ 26070848 (-)
AMCG00007684 shf,LOC108430988 other downstream 1806416 25630792 ~ 25631592 (-)
G25422 NA other downstream 2173057 25264332 ~ 25264951 (-)
AMCG00007637 NA other downstream 3156444 24262690 ~ 24281564 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other upstream 1443182 28894693 ~ 28921123 (-)
AMCG00007768 NA other upstream 1549538 29001049 ~ 29013947 (-)
AMCG00007817 NA other upstream 3740499 31192010 ~ 31246649 (-)
AMCG00007822 NA other upstream 3887205 31338716 ~ 31342792 (-)
AMCG00007835 LOC107594750 other upstream 4353388 31804899 ~ 31816151 (-)

Expression


Co-expression Network