G25819


Basic Information

Item Value
gene id G25819
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28070346 ~ 28078121 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU32393
aacagccctgacccgtcgaggcatggactccactagacctctgaaggtgtgctgtggtatctggcaccaagacgttagcagcagatcctttaagtcctgtaagttgcgaggtggggcctccatggatcggacttgtttgtccagcacatcccacagatgctcgattggattgagatctggggaatttggaggccaagtcaacaccttgaactcatgattcatcagaccaggccaccttcttccattgctccgtggtccagttctgatgctcacgtgccattgtaggcgctttcggcagtggacaggggtcagcatgggcaccctgactggtctgtggctacgcagccccatacgcaacaaactgcgatgcactgtgtgttctgacacctttctatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32393 True 396 lncRNA 0.54 2 28070346 28078121

Neighbor

gene id symbol gene type direction distance location
AMCG00007725 NA coding upstream 14489 27965346 ~ 28055857 (+)
AMCG00007727 myo9a coding upstream 148706 27918958 ~ 27921640 (+)
AMCG00007720 gramd2,LOC103030744,LOC107748265,LOC106562775 coding upstream 214912 27841088 ~ 27855434 (+)
AMCG00007721 znf609,LOC107745096,LOC107695009,LOC107680896 coding upstream 257115 27795968 ~ 27813231 (+)
AMCG00007723 znf609,LOC796180,LOC107748266,LOC107559441 coding upstream 311523 27754213 ~ 27758823 (+)
AMCG00007733 LOC107745566 coding downstream 289147 28367268 ~ 28378252 (+)
AMCG00007736 mpi,LOC106560745 coding downstream 336844 28414965 ~ 28421296 (+)
AMCG00007734 NA coding downstream 353860 28431981 ~ 28438035 (+)
AMCG00007741 NA coding downstream 473699 28551820 ~ 28576250 (+)
AMCG00007746 commd4,LOC105008267 coding downstream 534493 28612614 ~ 28617398 (+)
G25753 NA non-coding upstream 498855 27570543 ~ 27571491 (+)
G25709 ppib,LOC102792920,LOC107680152,LOC107577199,LOC107754356,LOC107673286 non-coding upstream 500993 27566695 ~ 27569353 (+)
G25699 NA non-coding upstream 714269 27355874 ~ 27356077 (+)
G25677 slc25a44,s2544,LOC108438536,LOC108432728,LOC107673271 non-coding upstream 740144 27328947 ~ 27330202 (+)
G25674 NA non-coding upstream 763280 27303848 ~ 27307066 (+)
G25827 NA non-coding downstream 26481 28104602 ~ 28109590 (+)
G25984 NA non-coding downstream 653009 28731130 ~ 28731401 (+)
G26103 frmd5,LOC107691145,LOC107556247,LOC103373640,LOC570903 non-coding downstream 996335 29074456 ~ 29082381 (+)
G26146 NA non-coding downstream 1233502 29311623 ~ 29311944 (+)
G26167 NA non-coding downstream 1289252 29367373 ~ 29367723 (+)
AMCG00007640 NA other upstream 3570696 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 3875865 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 4400267 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 4876825 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 4930825 23133811 ~ 23139521 (+)
G25822 NA other downstream 5701 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 360523 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 604050 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 821937 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 924974 29003095 ~ 29006379 (+)

Expression


Co-expression Network