G25822


Basic Information

Item Value
gene id G25822
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28083822 ~ 28094741 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU32400
agcagTATTGAAAATTAACAAATAGTTTGATTGTGCTCAGTATAAAATGAGTTAAACAATAACTGACTTTATTATACATAAATGGCCagtactttattttgtaataatctgtaaaaaaatgtttacttaaaTTGGTATTTTGATCATGGCCAGTTaagtttaatatttcattagatttaaaaattaaaactgcaagTCAGATCTGGGAATGAATCTATGCATAATACACACTGCACTATCTTTAGTCCTGGGGTTTGAAAAAGATGCCAGATCTAACCTGCGCCCCGTTTTACTACCATGCGGACACAGGCATACAGCAAGAACACGTGGAAACTTTAAAAGTTCAATTACAAAATTCAAATCCCTCTTTTGCATCATCTTTCACAGCAGGTGGGTTTTCCAGTCCCCCGTCTTCTGGCCCGTCCATGGGGAACCCTGGATGGTGGTCCTTTCACAGGCCATCATACTCATGCGCGCAGTATCCCGTAAACAGAGGCTGTGCCTGGATGCCGCGCCGAGCAGTCTGCAGCGGAACTCTGTGAGGCGGGGGTACGCCTGGCCCGCACTAGGGGTCTGCTCCTCATCACTCCACAGCCGCTCAGCCACTGCGCACGCCCTCGGCCACAGGCGAGGAGTCAAGTTGGTGGCATCGACATACTCCCCCCACATGCAGGCTTCTCCCCCCATCACCAGCTTCTTCTGCTCAGCGGTGCCTTGAAGTTCAGTGGCTTGACTTCATATGCTTTTTGCCAGTCCTGGCCGTACGAAATGACGTTGAGGTACCAGGGAGAGGAGAGCAGGACCTTGAGCCCCCCGGTTGTGATGTCTTGCatctctgtgctgtactgctcCATGTTGCCCTTCCACACGTGCACCACTGTGTCCTTGGGTACTTGAACGTTGTTGTCAAACACTTCCTGCCACACCACGGCGTTCTTCTTCAGGGTCATTGTGATATTCACGAGTgtTCCAATGTAATACGATTCCAGTTTCCGGTAGTCAGTCCCAAATCCCATCAATGACATAAACTTTTGAATGTCTGGATTAGATTTCCAGCAGGTGAAGTCCACTTCATCCCCTCCCAGATGGATGTAAGAGTCTGGGAAAATCATTGCCACCTCTTTGAAGAGGCTGCTCATGAACTGATAGCTGGAGTCAAGAACAGGGTTCACTGGGCCAAACGTCCCTGAGGGAACCGATCCTTTGTAGCATGGGGTCAGTAAGCCAGGACTGGGTGTGGCCTGGAGTGTCAAACTCAGGAATTACTCGGATTCCACGCATCCTGGCGTGCTCTATAACCTTCTTCACATCTTTGATGGTGTAGATGTGTGTCTGGGAGTGGTAGGCCCCCTTTAAAACAAGGAGCACATAGGCCTACACTCACCATTGTGCTGTACCAGTTTATTTACCTTAAAGTCAACAATTTGTTGTGCGCCTCTCTGGAGTCAAAGTTTAGTATTTGCTATACTTCCAGAAAGCCGATGTGAATGCTATGTTGGAAGtaatattgcagtttaattcagcattttatatagttttattttccatccATTAGGTTGTATAATCCCAACTCCACATCTCTGCTGTACTTTACATGAGATCAGAGTCACAGCGGTCCTCCAACTTTACCTCCAGGACAACAAATCAGTCAGGCCAGGGAATGCGTTCTTTACCCAACATTATGGTTAAAGCCCAAGACTGTCAggatttgtaaattattatttaattctcaTCAGTAATCGTTCGTGTGAATCAGGAATTAGAAATATCCTAGTTGATAGGCAACAGTAGTTCAAGAGGGCAtcagtcctgcaggttttatgCTTACATatacaatttccattttaaccTTTAAATTATTAGTACCTCAAAATTAAGGACCTaagtggaacaaaaaacagaagacctTTTGTGTCTCCAGCGCTTCAATCTCCTGGACCTGATTACTGGTTCACTGCATGTTCcttgtattcagtatttttgGAAAGAGCTGCTGTTGATACCTTCTTACTAAGGTCAGGAAAGGTGATGCTCTGGTATGGGAAGGAGGGATCATCCACAATGTGCCAGTGAAACACGTTAAACTTGCTGTAGGCCATTGCATCCTGTGTAGGAAAAGAAGAGTTTTTTGGTATGATTTTAAGCTACCAAAGCTgctgtgattatttttgttttctcaaaacaTCCCAATACCCTTCCCCCTAACAACATACTATGggaaatgcaaatcaatttaagCTAACTGACACTTATTTTGTACCCTGAGCTGACAAACCTGACAAATCAACATAAGCTTCGATGTAAGAACAAGATAGCGAAGCCCCATTACCAGTGTCTTTAGGATGGTGTGGAGAGGTAAGTAGTGTCTGGAAGAGTCCAGTAGGAGTCCCCGGTGTTGGAAACGGGGAAAATCGGCAACCTCTGTCTTGTTAACATAATACTAAGAGGGGGGGAAAATTCATGTAGTCAGTGCTTTCTGCTGAGTGGTCGAACTTCCAACACACAAAAAGCATCACATATTCTGTCCTTTAAGAATCAACCATCCTACTATGGCTGTAACTGAAAAGGGTTTTACAATATTGATTGATGAAAACACCAACCCACACCATGTTCTCCATTACTCATTCCAATCCATCTCGGCAGACTGATCACTGGTGTCAGCCCAGGATTCAGGATTTGTTGCACTGTCAAAGAATGTGCTTTAAACGCCGAGTGCAAGGTGCTCCTCTGTGTGATCTGCACATGTACACTTTCAAAGATAGTCTTTTTGCTTTTGCATGGTGCCAAGTAGccacactgcagtacagtgtgATGCTCCATGCTGGGCTCAGAGCACTGGTCTTAGTGTTCAATGAGTGTATAAATACCCATCTTGAGCCCTGACTCCAAATTGTCTCTGCAATGATGAACAGTGTGTTGGTTCtgtgattatttattcattttgagaGACCAAGGCAAGATAAATGATCCTTTTATTCAATGTGAGTGAAATGATGAAATGCATCTTAACTGAGCAATTGCACAACTGGGTTATCAAATTAGATGAAAGAGACACTCCGTCTGTATAAcatgaacactttttttctgaaatcagTACTTACAGTGCCAACATCATCCTGGTAAACAAGCTGACTGAATGTCTCCAAGCCTTATGAAATAAATCACATGAAATTTAATGTTACATGTTTAAGTATTAATCCTTGGGTAGACCTTTAatacttcacacacacatatacatatacactcacctaaaggattattaggaacaccatactNN

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32400 True 3277 TUCP 0.43 8 28083822 28094741

Neighbor

gene id symbol gene type direction distance location
AMCG00007725 NA coding upstream 27965 27965346 ~ 28055857 (+)
AMCG00007727 myo9a coding upstream 162182 27918958 ~ 27921640 (+)
AMCG00007720 gramd2,LOC103030744,LOC107748265,LOC106562775 coding upstream 228388 27841088 ~ 27855434 (+)
AMCG00007721 znf609,LOC107745096,LOC107695009,LOC107680896 coding upstream 270591 27795968 ~ 27813231 (+)
AMCG00007723 znf609,LOC796180,LOC107748266,LOC107559441 coding upstream 324999 27754213 ~ 27758823 (+)
AMCG00007733 LOC107745566 coding downstream 272527 28367268 ~ 28378252 (+)
AMCG00007736 mpi,LOC106560745 coding downstream 320224 28414965 ~ 28421296 (+)
AMCG00007734 NA coding downstream 337240 28431981 ~ 28438035 (+)
AMCG00007741 NA coding downstream 457079 28551820 ~ 28576250 (+)
AMCG00007746 commd4,LOC105008267 coding downstream 517873 28612614 ~ 28617398 (+)
G25819 NA non-coding upstream 5701 28070346 ~ 28078121 (+)
G25753 NA non-coding upstream 512331 27570543 ~ 27571491 (+)
G25709 ppib,LOC102792920,LOC107680152,LOC107577199,LOC107754356,LOC107673286 non-coding upstream 514469 27566695 ~ 27569353 (+)
G25699 NA non-coding upstream 727745 27355874 ~ 27356077 (+)
G25677 slc25a44,s2544,LOC108438536,LOC108432728,LOC107673271 non-coding upstream 753620 27328947 ~ 27330202 (+)
G25827 NA non-coding downstream 9861 28104602 ~ 28109590 (+)
G25984 NA non-coding downstream 636389 28731130 ~ 28731401 (+)
G26103 frmd5,LOC107691145,LOC107556247,LOC103373640,LOC570903 non-coding downstream 979715 29074456 ~ 29082381 (+)
G26146 NA non-coding downstream 1216882 29311623 ~ 29311944 (+)
G26167 NA non-coding downstream 1272632 29367373 ~ 29367723 (+)
AMCG00007640 NA other upstream 3584172 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 3889341 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 4413743 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 4890301 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 4944301 23133811 ~ 23139521 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 343903 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 587430 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 805317 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 908354 29003095 ~ 29006379 (+)
AMCG00007788 NA other downstream 1527570 29622311 ~ 29724734 (+)

Expression


Co-expression Network