G25827


Basic Information

Item Value
gene id G25827
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28104602 ~ 28109590 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU32410
TgtacttttctttcattttaatttcccttttctAATCCAAATACTTTTTGCAAAAGTATAGATACAAATAATTCTTCAACAATGCacattgtggtttgttttctgtaatgaaaaacacttcaaacactgtaggccttttctttctttgcattgCACGACTCACAAAGCACAGAGCTAGATATTTGAAGGTgattacaaaaccaaaataagcAAAACTTTAGCAAAAAGAGGTGCATTTTCTTTTGGGGACAGTCATCGTTTCTTAAGTTTATTGACACAAGACAGGTATTTATGGGATGTTTGCAGTCAAATTCAGAAGGGGGATTACACAGCCAggctatatataaaatattttacaagatTCCCTGGCTATTTGCCTTGCATTTACCTCACAGCTATTCTTGTCTGATAATTCACACAAGACTCTcttcaaagatttttttttatttttttatgacatttatttaaatagtacagtctttttttttttttttgtccttttttaagAACTGTTATAACCGATTAAACCAATTGGGTCTGCAACTCCCCTTTCCCAGAATGTTTtagaaactgagaaaaaaatatctatcCATTTAACCAATTTGTATATCATATAAATACATGATATATAAATTGGTTAACttcagtgaaatgttttttattttttacttcaagGGCAACATTTCCTGCATTACATgcaggctttttgtttttttcagactGCCACACTGTAGGAAAAAAGTACATTAACAATAAGGAATACCCACTGTGACCACTCAGATACAGGGGGTGCCTTGTGGTGAGAAGTCTCAATGCAGATAACTTGAATAGTTTCTGCCTTGTATCTCaactaaagaaattaaaaaaataaaaatacgaCATTTTGGTGGGAAGCATTGAGAAGTTAATTGGCATTTTTTTGTACATTCCTGTCCAAACAGCTCACAATGTTAAATGCAAAAGCTTTAGAGCATCTATAACAATCTGTTTTTATACAAGTTGTTTCCAAGACTGTTTAACACAAAATCGATTTCTTGGGCCCCCCTAAggccccttttcttttttgccacTGAAGCGTCAGTTAGCCCACATGAAGGGACTTGTTTAAAGcagcattaaaatataaagacagcaacaagaaaattacaaaaagttaGCCCTGCGACCACCAGCTCCAAAGAAGGTTGCCATGTAGATGTGATTACACCTGTTTTTGTTCAGAGATCTTCCTCAACTCTACAAGCTTTAAAACCAAGCATTTTCAAAACACTATTCTGCTGCCATGTTCGAATGGCCGACGCCTTGTTAGAGCGCACAGACTCTTTGGAGAAAGACTTCAGGTGATCCCAGCATCTCTTTCTCAAAGAATTAAAGCCTGTATTCTACCTAAACTGATTTTCCCTTTTTGACCTGAGGAAGTATTGGGAAGTTTATTTGGGGTATTCTGTTTGcgctattaaaataagtatttgaataaaaaaaaaaaaagatttttttccTGTCTTCGTTGACAAGCATCTTGGTAAAGAAACCTAAATAATCCCCCCCCCCTGTGGATTACAGGCCATAGTATGCAGTTTTATGCTAAAAGCAACGGAATTTGAGGATCAAACATTTCTGCTCTAAATTATCAACACAAGAAATGCTAACCCTAACTTGGTTACTTCTTTTTGACTGAGAAAAGCCGAGGCTCAAAGGTTACTAAAGCACTGCTACGGTTGTGGAGAGCTGTAATGAAAACAATGGAGAGAGGGATGAATAGGTTCATTATCCTATGTTAATTATCCAGCCTCCCACCCTCcacataaaatattcaaatataaaacaaaaaaagcagggAGAAATACTTAAACTACACAGCAAATATACATCTTGAAGATTtgtaaagaataaatatttttttgtaatttaaaaattatgcaAACACGTGCCACGCTTGCTCTTTAACTCTTCCATGCATATGCATtatttacaatttgaaaaatactgatttccttttttttgttttgcttttttgtttgttattttacttaaCAAAAGGTTGAACCCCCTTACAATCAGCCAATCAACATTCAGCAACCTGGAAGGGGATCTTCACCATGTACAGCATACATGGCTGACGGGACACAAAGctgtgttgaaaataaaatgtcagtccATTTCCTACACacaaggaaatgaaaaataaagccaaAATGGAAACgaagatgaaaaaaaactgcaaaaaacaaaaacacaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32410 True 2240 lncRNA 0.35 2 28104602 28109590

Neighbor

gene id symbol gene type direction distance location
AMCG00007725 NA coding upstream 48745 27965346 ~ 28055857 (+)
AMCG00007727 myo9a coding upstream 182962 27918958 ~ 27921640 (+)
AMCG00007720 gramd2,LOC103030744,LOC107748265,LOC106562775 coding upstream 249168 27841088 ~ 27855434 (+)
AMCG00007721 znf609,LOC107745096,LOC107695009,LOC107680896 coding upstream 291371 27795968 ~ 27813231 (+)
AMCG00007723 znf609,LOC796180,LOC107748266,LOC107559441 coding upstream 345779 27754213 ~ 27758823 (+)
AMCG00007733 LOC107745566 coding downstream 257678 28367268 ~ 28378252 (+)
AMCG00007736 mpi,LOC106560745 coding downstream 305375 28414965 ~ 28421296 (+)
AMCG00007734 NA coding downstream 322391 28431981 ~ 28438035 (+)
AMCG00007741 NA coding downstream 442230 28551820 ~ 28576250 (+)
AMCG00007746 commd4,LOC105008267 coding downstream 503024 28612614 ~ 28617398 (+)
G25819 NA non-coding upstream 26481 28070346 ~ 28078121 (+)
G25753 NA non-coding upstream 533111 27570543 ~ 27571491 (+)
G25709 ppib,LOC102792920,LOC107680152,LOC107577199,LOC107754356,LOC107673286 non-coding upstream 535249 27566695 ~ 27569353 (+)
G25699 NA non-coding upstream 748525 27355874 ~ 27356077 (+)
G25677 slc25a44,s2544,LOC108438536,LOC108432728,LOC107673271 non-coding upstream 774400 27328947 ~ 27330202 (+)
G25984 NA non-coding downstream 621540 28731130 ~ 28731401 (+)
G26103 frmd5,LOC107691145,LOC107556247,LOC103373640,LOC570903 non-coding downstream 964866 29074456 ~ 29082381 (+)
G26146 NA non-coding downstream 1202033 29311623 ~ 29311944 (+)
G26167 NA non-coding downstream 1257783 29367373 ~ 29367723 (+)
G26171 NA non-coding downstream 1264786 29374376 ~ 29375878 (+)
G25822 NA other upstream 9861 28083822 ~ 28094741 (+)
AMCG00007640 NA other upstream 3604952 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 3910121 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 4434523 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 4911081 23189460 ~ 23193521 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 329054 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 572581 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 790468 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 893505 29003095 ~ 29006379 (+)
AMCG00007788 NA other downstream 1512721 29622311 ~ 29724734 (+)

Expression


Co-expression Network