G25972


Basic Information

Item Value
gene id G25972
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28696465 ~ 28699849 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU32595
GTCATAGGACACACACCTGTATAATCTCTGAAATCTGTGACTTGGGGAAAGCAACacaacacttttatttaattattgtgcatttattctaaaaatattatttttgtaaaccgTGCAGTTGAAAAACGTCAGATGCCAGACcactaaaaaatacaatacaaaaaatgatgtATATATGCAGATACattggctataggaagtattcacccccttgtaatcacatttttaaaaaatgcacaacctactcaacacctTGAAGAtgcaatatacatattattgtgaaacaacaattaatgaaaaatacaaaaactgaaacagaagtattcacccccgaGTCAAAACTTGGTCGAACCACCTTcgacagcaattacagctgtggaTTGTTTAGGGTAAGTTTCTACCAGGTTTgaacatctggattgtgcagtATTCAGTATTGGATGGGAATCATTGGTGGACTTAAATCTTCAaatcttgccacagattctcagaTTCAAGTTcagactttgactgggccactatagaacattcactttcttgtttttaagccactccagggtcgctttgtctgtttttgaaagctccATGGCCTTGTGTCtttaaaaccatatttattGCATCCAGATATATtcaacttattgtgtgaatCCTGAAGGCACCCaagcttatttaggagtgtcatagcaaaggagGTGAATACTTCtgtaatgaagacttttcaggtttttattttaaatggtttagttttttcaacaCATTAAATGTTGTGGagtatgttgtgtaaatcaaagaaaaaagaaaattgtaatgcatcaaataaacaatgtttagATATGgatttcttgtgtgtgtgaaatgaatgaatacagcCTCAGTACACTACACAAGAATATAAagctttacatttatattgaacatttcaacatAATTCTACTATGATATAACAGTTACCCAGTGTAATATTATATTACCCTTAATTAAGTAGTTACATTCAGATAACATCCAGGTTTCCTTCATTTCAATTAGGTcttaaagattattattttttatctcattAATGAATTTTAGGTTTCCTCTAAGGAACTATAGaagtacaatatataaaacattaagaaaaaaaaaaaacactgatgtcTATCATACAGTGCAGCATGGCTGGGAGAGTCAGTCTACTCCATTTCAATTacttccttttcttgttttaaaggtACAAAGTCTTTTTTTGGAGATCTTTTTTCCCgtcacaacaaaaacaattacaattatgaagatgattacaCCAAAACACCACAGGATGCTTCCTACCATCAATCCTGTAAGAAAGTGAACCATCACAGAACTTATAAACATTACAGTAGCTAAACTGAGATATTTTCCACGTTTATgtgtattatatacagtactgtgcaaaagttttaggcaggtgtgaaaaaatgctataaagtaagaatgctttcaaatagacatgttaatagattttagttatcaattaaaaaaatgcaccccagttcctgtgttttcgtgcatagttgagttgcttggccttgttaccacgtcggaggtatgactttttggctgcaagtcttccatgaaggccattTCTGACCAgattctccggacagtagatggtgtaccagggtcccactgttttctgccaattctgagctgatggcactgctggatatcttccgattgcaaagggaagtaagcatgatgtgtctttcatctgctgcagtaagtttccttggccgaccactgcgtctacggtcctcaacgtttccggtttctttgtgcttcttcaaaagagcttggacagcacatctggaaacccctgtctgccttgaaatgtctgcctgggagagaccttgctgatgcagtataactacctgttgctgtgctcagtcttgccatggtgtatgacttttgacagtaaacagcaacctcaccttgttagctgagtttggctgttcctcacccagttttattcctcctacacagctgtttctgtttcagttaatgattgtgtttcaatgtGATTTCAAAAATCCCTGACTTTTTGCAAACGTACAACTGcaaactgatgctgttttgaaggcaaagggtggtcacaccaaatatggatttgatttagatttttcttctgttcactcactttgcatttagttaattgataaatataatctatgaacgTGTAGTTTTGaatgcattcttactttacagcattttcttttgcacagtactgtatatattatttcataaaGTAAAATCTGATAATTACAGAAAGATTTACTTGTATAcaacatttgcaaatatttaaatgtagtcATGAGACTATATTTATGTAGGCTACTCTGAAGAAAATGTTGAGAAttgattaaacaatatatacatgtaaagaaTGCCATTTAGACTTCAAAAATcaataaagttaatatgtaCCAAATAATAACGAGAGAGGAATGTATGTATAATACGAATGAACATACCTGACTGGTGTTCCTCATCATCTTTCAAAAGACTCAATTAAGTTCCCCCCCCAACAGGATATGAAATCAGTATGCaccagtaaaaaaatacaatgtaggACTAATCTGAACCCATGATTCAATCAGAAGTGAATTACTCAGTGAATCCACTCCAATGCATATTCCTGCAGCACGATATACTGTTTACATACCCACAGATACTTTTTTCTGGAATATCTTCATCGTCGTCTTCAATTACAGTATctgagaaaacacaaatatttattttggaatcaAAGCAATCTGCTTCAGTGACAGACATTAtggaataattaaaataagagcCCTAAGCAACATAGCACAAAATTAAACAACTGTAATCACCTCTGACCTCTTTtttagcgcttttccaccgacaagtaGCCGGTGCTCGGCCTCGGAAGCAGCTGATGATTTTGGGAACCGgcgcgcttttccaccggttttggacccgaacgctgacgtcactggtgtgGG

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU32595 True 2981 lncRNA 0.36 2 28696465 28699849

Neighbor

gene id symbol gene type direction distance location
AMCG00007748 NA coding downstream 22203 28647011 ~ 28674262 (-)
AMCG00007749 man2c1,LOC107682572,LOC106596370 coding downstream 59159 28624088 ~ 28637306 (-)
AMCG00007750 NA coding downstream 84224 28595995 ~ 28612241 (-)
AMCG00007744 LOC107662462 coding downstream 115275 28579139 ~ 28581190 (-)
AMCG00007742 NA coding downstream 146919 28546752 ~ 28549546 (-)
AMCG00007762 NA coding upstream 54631 28754480 ~ 28761777 (-)
AMCG00007758 NA coding upstream 77906 28777755 ~ 28843806 (-)
AMCG00007761 NA coding upstream 162729 28862578 ~ 28866585 (-)
AMCG00007760 dapk2a coding upstream 166755 28866604 ~ 28878017 (-)
AMCG00007759 cib2,LOC107757746,LOC107598895,LOC107698385,LOC107573330,LOC107752320 coding upstream 251770 28951619 ~ 28960104 (-)
G25768 NA non-coding downstream 1029393 27662224 ~ 27667072 (-)
G25750 NA non-coding downstream 1131756 27564039 ~ 27564709 (-)
G25749 NA non-coding downstream 1132775 27563240 ~ 27563690 (-)
G25748 NA non-coding downstream 1133447 27562728 ~ 27563018 (-)
G25746 NA non-coding downstream 1142355 27553497 ~ 27554110 (-)
G25985 NA non-coding upstream 32915 28732764 ~ 28732994 (-)
G25987 NA non-coding upstream 34263 28734112 ~ 28734449 (-)
G26092 NA non-coding upstream 331561 29031410 ~ 29049165 (-)
G26115 NA non-coding upstream 531094 29230943 ~ 29232708 (-)
G26147 NA non-coding upstream 611769 29311618 ~ 29311943 (-)
AMCG00007704 NA other downstream 1325946 27357731 ~ 27370519 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other downstream 2625617 26053764 ~ 26070848 (-)
AMCG00007684 shf,LOC108430988 other downstream 3064873 25630792 ~ 25631592 (-)
G25422 NA other downstream 3431514 25264332 ~ 25264951 (-)
AMCG00007637 NA other downstream 4414901 24262690 ~ 24281564 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other upstream 194844 28894693 ~ 28921123 (-)
AMCG00007768 NA other upstream 301200 29001049 ~ 29013947 (-)
AMCG00007817 NA other upstream 2492161 31192010 ~ 31246649 (-)
AMCG00007822 NA other upstream 2638867 31338716 ~ 31342792 (-)
AMCG00007835 LOC107594750 other upstream 3105050 31804899 ~ 31816151 (-)

Expression


Co-expression Network