G26243 (LOC106587622,LOC106562410)


Basic Information

Item Value
gene id G26243
gene name LOC106587622,LOC106562410
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29726394 ~ 29729537 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU32916
GTTGTAATAAGGCTGTTAAGTACACAACAATAATTCAGAACATAGAAAAGGTAGCACTTCACTTGAGTTATTACAAGCCACTTTATTAGAACCAGATGGATTTAAATGCAACAGTACCACAATAATAGGATATTAATTGCATGTGTTAACATGGTGTACATAAAAGTCTGCATGTTGGGTAATAGATCATATTTCTGtcatctatacacacacacacactcaaaaccGCAAAATGTAAAAGGTTAACAGACTATAAAAAGCTCTTACTACCAGATCCAACCCTTGATTGGCAGGACAAACATATAATTCCAGTCAAAATTACAAGAACATTATTACCACAGCAGTGCATAGCAAATAGATTTATAGCcaatttaacaaaaacagaGGATACTGCAACAAGCATAACCCATAATTCCAAAGCAAACACTGCAGCTCTTAAAATCACACTTGAAACACTAGACAGTTACACTCAGTTTGAAGTACCTCAATATCTGTCATAATAAATGTATCGAAGGGCAcaaaaaccAAATCCTGCTTTGGTTTCTCTTACTGTGGAAAAGAACTCCCGTTCTCAAGTTTGCACAAGTGAACTCCTGCCAAGTATGCAGAGGGATAGTCATGTTCCCATTCCCTTCAAGAGATATCAGTGCCTTGACAAGTCAGAGCGTTTCTGTTTGATGCAAACACTTGGACCAAAACCACCATCTTCGCTTCTTTCGGAAACGCTCCAACTGCAAGGCACCCGTCTCAGAGGCTGCTTGTCTTGAAGTGATATTTTAGGAAAAGATCTGTCAAGAGCCATCTGTGCAAGTTTTCAGGACAGACTCAACAGACTTAAAAGGATGTGCAAAAGCTACAGGGGAGTTTCAAAAACTTAATGATTAAAGGAGAATAATCAATGATAATAGGGTGGAAAAACAAGACGACAATGATGACAAAAGCTCACCAGCTCTTACAATACCAGCTCACACTTGAGCCGAATAAAAGTCAGAATCAAACTTGAGTTTTGAGGGACATCAAATGCACGTTTCTCACTGCTGAAACCAGTAATTGTGCAAATATAggacacatacaaataaataaaatgaagcctAATGAATTAATCTCTTTTTATAAGCATGCAACATATGAAATACCGAACAGGCATCTACTGCAAGgaaactaaaatgtgaaaagttgCAATATACAAAAAAGGACATAGGGAAACATTATTCCCTTTTATCTTAAGTCTGTTAAAATTGGCAGTTGAAGCATTTTGCCCTAGGGAATGAATATTTTGGCTGagaaattatgaaatatttacaaCTATTGGTCAGGGATGCAGTCTGTAGCAACTGTGAGTCTATTTTGTTCAATGAGTCAAGTTCCCTTAACTTACATTTCTAAGCTTATGGGCCACAAACCACACATTTTTATCCTCAATGTATTTATGCACAAGGCCTTGCATGAACTTGCTGACAACTAGCTGGTGCAGTTAAAACTAGTAGTTAATTGCAGAATATCAGATATTATCCAAACTGGTTAAAGGAGGGATGAACGTAAAGGTTATTCGATCTTAGACTGAAGACTAAGTTTTGTATCCCCACAACTCTAACTTCCTTACATCATTATTCTCATTAATTAGCTTCACTCCAGAGATGCGGGGTGTCAACATACATCTGCCTTTAAAGAACCACAGGGAAGAGTGCAAaacactaaatacaaataaatacgcAAAAcctatttaaacatttgtgagAGCCACATATACTGTGGTGTACATATAAAACAGACAGTgagataaacatttaaaaaaacaaaacgaacacTATGAAAATGCTTCCCAAGCAATCCATGTCCCCAGTTGTCTTAAACTGAATCGATGTGCCCTTCAAGGTTTTGATTTCAGTAAACATCAAACCACACTATTCTGCAAAGGCCAGACAAGCCAAAGCAACAAAAGATATACACCGCAGTTGTTACTTGGAGGAATCTTGGTATAAGCACCACTTGTAATATAGCATTAGTCAAAACTGTGaaacagattaataaaataaaaatatttctacTTGGGTCCACCTGACTGGTTGACCCCCTTACTACGACAGATGCAATACACCACAATTACTGTGATTTAATTCTACTTTAGTTTTGGACTTTGTTATGCGCTAAATCATCTCTAATCAATCTGTGCTATAAGATTagtctttaaaaacatttttagagcACTTCAGAAGACCTCAggcacagtaaaaacataaaactgaagGGAATAACAGTACTAGGGATCTCACACAGTATAGTTGATCCACCCATCTAATTTTTGgaatgacttaaaaaaaaaaaaaaaaagtatctgtCTAGGTAATTTGCAATGATTTCATGTGTCTCCCGTTCTACCTCCAGGACAGAAGCCACCTCTTAAAGAAACAGCTATCCTAAATGCACCAGGGTCATCACTGTGGTGTAACCGTGCTGCAGGCTGTCAGTGTCGGTCAGTGAGTAGTTCTCAGTCACAATGTGGTCGCAGCCGATCTCTCCGTTGCCGAAGAAGCCGAACAGGGGGATGTTGGGGAAGACCTTGCGGAAGGCATCGGCCTCCACATTGTGCTTGCCATTGTAGTAGTTGTGGCCGCGGCCCACACAGGCAAACATGAAGGCCACGGTGTTCCTCTCAGGGAGGCCGGCTGATTTCAGGCGCTGCACTGCTGCCTCGGCAGACTTCTCGGTGCTCACATCCTGGTCCAGCAGGACTGACGCCCCTTGGATCCTCGGCCCACTCAGCGCCAGGCCCACCACTCCGTATGAGCCTGGGGAGCAGCTATCgaaacacagacagacgcagAGAAGGGACAATGGTGCATCACAACCTCATCAAGTCTGCTACCCTGCTGCCACAAAATACATTACTCCcgacagtgtttatttttggagGTAGAGTTCatgatctttatttttatttatttttaaatggaattatgTTCACAACCTCAGCAAGATTTCAAACCTTTTTGTAAAAATCTTCCCCTTCATGAACCTAGTGGCAACACTAATCCTGGTGTTATCAAGAGCAGATTTCCAGAAAGAACACTGGCAAAGTTAAG

Function

NR:

description
PREDICTED: F-box only protein 22-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32916 True 3083 lncRNA 0.40 2 29726394 29729537

Neighbor

gene id symbol gene type direction distance location
AMCG00007787 etfa,LOC107712526,LOC107557988 coding upstream 117797 29586473 ~ 29608597 (+)
AMCG00007784 scaper,LOC106561156 coding upstream 241211 29437666 ~ 29485183 (+)
AMCG00007785 NA coding upstream 289361 29433012 ~ 29437033 (+)
AMCG00007781 tspan3,tspan3a,LOC107690355 coding upstream 324393 29392907 ~ 29402001 (+)
AMCG00007777 kti12,LOC107562123,LOC107715238,LOC107725737 coding upstream 364907 29355051 ~ 29361487 (+)
AMCG00007796 NA coding downstream 200211 29929748 ~ 29941831 (+)
AMCG00007797 vps13c coding downstream 215583 29945120 ~ 30043181 (+)
AMCG00007798 rora,LOC103141220,LOC106561150 coding downstream 658656 30388193 ~ 30401103 (+)
AMCG00007799 NA coding downstream 679494 30409031 ~ 30429130 (+)
AMCG00007800 anx2a,anxa2,LOC108433632 coding downstream 700303 30429840 ~ 30438133 (+)
G26196 LOC107575789 non-coding upstream 186332 29539683 ~ 29540062 (+)
G26171 NA non-coding upstream 350516 29374376 ~ 29375878 (+)
G26167 NA non-coding upstream 358671 29367373 ~ 29367723 (+)
G26146 NA non-coding upstream 414450 29311623 ~ 29311944 (+)
G26103 frmd5,LOC107691145,LOC107556247,LOC103373640,LOC570903 non-coding upstream 644013 29074456 ~ 29082381 (+)
G26249 NA non-coding downstream 9165 29738702 ~ 29741082 (+)
G26262 NA non-coding downstream 70220 29799757 ~ 29803603 (+)
G26319 NA non-coding downstream 673028 30402565 ~ 30406647 (+)
G26360 NA non-coding downstream 780998 30510535 ~ 30522510 (+)
G26430 NA non-coding downstream 1214764 30944301 ~ 30945248 (+)
AMCG00007788 NA other upstream 1660 29622311 ~ 29724734 (+)
AMCG00007769 acsbg1 other upstream 720015 29003095 ~ 29006379 (+)
AMCG00007763 tbc1d2b other upstream 814828 28900058 ~ 28911566 (+)
AMCG00007754 NA other upstream 1026332 28682171 ~ 28700062 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other upstream 1271687 28438644 ~ 28454707 (+)
G26258 tpm1,tpma,LOC108237348 other downstream 25503 29755040 ~ 29819552 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other downstream 1684617 31414154 ~ 31440378 (+)
AMCG00007854 NA other downstream 4033976 33763513 ~ 33794941 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 5881445 35610982 ~ 35620801 (+)
AMCG00007889 NA other downstream 6566681 36296218 ~ 36302841 (+)

Expression


Co-expression Network