G26249


Basic Information

Item Value
gene id G26249
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29738702 ~ 29741082 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU32926
aaaattattcagttatttttattttcattacaaatatttctCAACATAAAACCAATATCATGTTACAAAAATTGATTCTGAGATTCAATgttataaaatatcaaacaataaAATTTCAATTTATCATTTGTAATTCTATATGAGAGAAGTGGTCAGTGGTCttaatacttttgcaaggcaggtacatataaaatatatatgtacagctctggaaacaattaaagagagcactccaagttcagaaatcaatgttaagtggtctcttaatttttctcagagctgtatgtatgtatgtatatatatatatatatatgcacagtaaTGACAGTAAGTCATTATATGCCATTCTGTCATATAATTGCAGTAGATTATGGTTACACCTTTTTATAATTTCCCAACTGCCACACCATTACTTATGTCCACATAAAATACTTGTGAATGCAACTTTACATTGCTGGATTCCAATACTGTGTTTCCAGACTGTACCTACAATGTCTGTAatggttaatatatttatattgcctTAGACACTAAAAGCCACAATTCTAAGGCTGTATGCAAGAATCACAAAAATCCCATAATGCAGTTATACACTTGAAAATAAAAGctattttatgattaaaatacTGCAGATCTTAAATCAAATTGAAAGAGCTTCACATTCAACTGAAGATATTCAAACATAACGCACTAATACAGATTCTGAAAAAATcttgattgatttatgtatttcattgttactgtactgttacatttcacaCAGCAATTAATTATACTTTACAAAATATGGCATTGAAATGTGTCAGCACATAATCTGGGAAAAGTATTCATATATTGCAGCTAAAATAAGTTGTTTGTGGGGAATTATTACAATGGAAAATTCATACAATTAACGTGGCAAAGTTTACTTtggactgttacttttgattcagtttacatatttaattggaTCTGACTGCGTGTTGCGATTCTTATAGAAACCATATTGAGAGCTACAACATGAAGGAGTTTGTTGGTAAACCGcgaaagcaaaattaaaattagcAGAGCTGACAAACTGATAATTTAAATCCAATAAATCCAATGCAATAACTTTCAATAACAGCTTTCATAACAGTTTCAGGGGGAGTTCCTTCAAGGCTGTTGTCTGTCTGACCTCTCTCATAGCTGCTGGAGAAATTTAAACTAAAAGTGTTTCCACTGTGTCGTTGTTTTTAGGATGACATTGCTCTAGTAACCTGTGATGTCAGATGGACAGAAGAGAACATTTACTCCAAGCTGACATCTTGAACGTGAGAGCAGTAGACTTGTGGGTtacaaaaactaatttgaatgtcaagaaatggaaagaaaaaatacagggTTCTGGCCTAAACAGATTAATAAACATTTGGcgatttatacatttcaaaacactgcAATGTGTGCTTTAAAGTTATCAGTCTTTAACATGACTGTGTGACCATGTACAGATGAGCATGCATGGTTGTATACATTCTTTCAATGAGCACATCATGTTTAAACAAAGAGCTTGGGGTAAAATCCCATCTGGTTAGCACCTCAGAGATCATACTGTAGTATTATCAAAAGGATAAAAGTTTAGTTCAAACAATTGCATTGttggcaaaaacacaaaacaacaccaaGTCATCTCACCACCAGCTCTCCATTACTCCAcaacttttcaaatgtatttctctctATTGGTAGTGTAAAGACATGAAAATAACAAGGAGAGGAACATCCTTCTCCTCTAAGAAAAACGTGTGattgtaaaatattacatcTGCTCTCATTTCAACGTCAAATCATTTTCAGTGACTGTGCGTCTCCCTCTGTGTCAGGTGCTCCTGGCTCTCTCAAACTCCAGCGCAATCTTCAGGGCTGTGCCATTGAGGCCAACAGACTGCATGTTGCAGATGATCGTTACCACCACCCCCTGTGGAGGGGTTGATGTCTCCATCTCGGTCTGAACCAGATCACTTGGTAACAGTAACAGGACACTGCTGGCCCCTACTGCGCCCCCTGTGTGTGAAACATAGTGGCGTCGCTTTCTACACAGCCcaaactgctgctgcttctcCACCACTAGCCAGCCCATTGCGTACTGTCCATCCTTGTCCCAGGAACCCTCAGTTCTCTCCACAGGAGTCCACATGGTTTGAACCGTCTCTGGTTTGAGGTAGCCTGGCAGGAGGCCTCTGCTGTCCTTAAGCTGTGCCATTTGGTAGCTGTACAGCATGGCATTGCCGAACACCAGCAGGTCACCCACAGTAGACAGAAAGCCACCCCCTGCCCATTTGTAGGAGTTGTCCACATAAGGGCAGTTCACAATACGgccttttttattgaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32926 True 2353 lncRNA 0.37 2 29738702 29741082

Neighbor

gene id symbol gene type direction distance location
AMCG00007787 etfa,LOC107712526,LOC107557988 coding upstream 130105 29586473 ~ 29608597 (+)
AMCG00007784 scaper,LOC106561156 coding upstream 253519 29437666 ~ 29485183 (+)
AMCG00007785 NA coding upstream 301669 29433012 ~ 29437033 (+)
AMCG00007781 tspan3,tspan3a,LOC107690355 coding upstream 336701 29392907 ~ 29402001 (+)
AMCG00007777 kti12,LOC107562123,LOC107715238,LOC107725737 coding upstream 377215 29355051 ~ 29361487 (+)
AMCG00007796 NA coding downstream 188666 29929748 ~ 29941831 (+)
AMCG00007797 vps13c coding downstream 204038 29945120 ~ 30043181 (+)
AMCG00007798 rora,LOC103141220,LOC106561150 coding downstream 647111 30388193 ~ 30401103 (+)
AMCG00007799 NA coding downstream 667949 30409031 ~ 30429130 (+)
AMCG00007800 anx2a,anxa2,LOC108433632 coding downstream 688758 30429840 ~ 30438133 (+)
G26243 LOC106587622,LOC106562410 non-coding upstream 9165 29726394 ~ 29729537 (+)
G26196 LOC107575789 non-coding upstream 198640 29539683 ~ 29540062 (+)
G26171 NA non-coding upstream 362824 29374376 ~ 29375878 (+)
G26167 NA non-coding upstream 370979 29367373 ~ 29367723 (+)
G26146 NA non-coding upstream 426758 29311623 ~ 29311944 (+)
G26262 NA non-coding downstream 58675 29799757 ~ 29803603 (+)
G26319 NA non-coding downstream 661483 30402565 ~ 30406647 (+)
G26360 NA non-coding downstream 769453 30510535 ~ 30522510 (+)
G26430 NA non-coding downstream 1203219 30944301 ~ 30945248 (+)
G26429 dnaja4,LOC107659503,LOC104917859 non-coding downstream 1204221 30945303 ~ 30946095 (+)
AMCG00007788 NA other upstream 13968 29622311 ~ 29724734 (+)
AMCG00007769 acsbg1 other upstream 732323 29003095 ~ 29006379 (+)
AMCG00007763 tbc1d2b other upstream 827136 28900058 ~ 28911566 (+)
AMCG00007754 NA other upstream 1038640 28682171 ~ 28700062 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other upstream 1283995 28438644 ~ 28454707 (+)
G26258 tpm1,tpma,LOC108237348 other downstream 13958 29755040 ~ 29819552 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other downstream 1673072 31414154 ~ 31440378 (+)
AMCG00007854 NA other downstream 4022431 33763513 ~ 33794941 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 5869900 35610982 ~ 35620801 (+)
AMCG00007889 NA other downstream 6555136 36296218 ~ 36302841 (+)

Expression


Co-expression Network