G26319


Basic Information

Item Value
gene id G26319
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 30402565 ~ 30406647 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU33009
ccgCAAAACCtcaaaagctgtgtgtgtgtttagtcaGGCAAAGACCGCTCTTGttctattttcaaaaataatactttgttgattgtaatttgctttttaaCCTTTGTCATCgttgttatttgtgttattttatttttggcgGGGGTGGGGTGTCCACTATACAGTGATTAAAACTTAGTGCCAAATGAATTTTCCTCTATGCTCTATCACGCTTATAGACATTATGCATTAGCTGTGCTGTGCATTACTAATACGGGTTCTAGAGGGTAATCCGAACTGCAGTGGAACCTCTTTTGTACAAACTGTGGTGAGATGAACACCCTTACAGATGATCTCATAAAACTGGTGCTAAACAAAATGTCTCCTTCAGTACATGAATGTGACGCACACCTCTGTAGTGCAAATCTAGGATAGCAACACCCATTTCCTGTTATCCCTATCACATGGTTTGTATGTCAGGAGTTCGTATAACATGACTGCATGTTAGTTACTACATGTACGGTTTATTATAAGCAATATAAATTGGAAACTGAAGCAGATTAAGgacttcttgtgtttttaaccTCACATTCATTGTCATCTGTGAAACTGGCAGTACTTGTATGTGGCTGTGGATATATGTTAGAACCACTTGCCCTAGAGCAGCCAAATCTGGCATCAAAATTCAGTTCTTAACCAGGATTTTGTAACAGATTCCTCACAGATATTGCTGTTCAGATTGTATTGCCGTTGGTGGGATTCAGTAGCCCTGCGATATCTTTTGCAGTTCATTGTGATACGGAGGACTCAGTAACTTATCCAGATGCACAGAATAAATGTGATAGGTGCTGTGCAATACTACTGTGTTCAAAATACTAAAGTACTACAATACTGGTATTGcataattacaacaacaaaaaaagtccaAGGATTATGTTTTATACCGTCCTGGTTCACTGAAgttcagtaaattaattaacagtttttaattaatgggACTCTGTCATGATAGAAAGCCATTCCTTTTAAGTGGAATAGCTGTTAAGTGCTGCTACAAAACCAGTAGTGGCATGTCAGTCACTTCAGAATTTAATtggtgaaagaaaataaaaaaatacaaagggGAACTGGATTTTAGTGCCAGATTTGGTCATCTCTGCAAATCCAGATGAATGGTATTGTCTTTCGTTTAGTGGTTGAGGGAACAACTGTATCTGGCTGCTTCCTTTGTCTGTGCTTGCTGTTTGTCAGGTGATCTGTGAGAGAGTGATGTCTTTGTAGCAGATCAGGAAGGCTGGCTGCTGGGATTCCCAGCTAGgagtgtgcttgtttgtttgcgAGTGTGTGTTTATAGACATAGGACGAACCCCAGACAAGGCTTTCAGGAGTTTAGAACTGCAGGGTCCAGTGGTGAGTTTGTAAagtgttttcccttttcttctctttacttttatttgtattagtctGTTTTATGgcacttttaaaaaaataataatactctcaTTTTTCCAAAGTACAACAGGCGTAGTTAtgaaagtcaaatacattttgaaaaaacataacaaaaaaaacttctaGCCATAATCGAATGTCAagcaataatataaatgttgaatatttttttttgtgcatagGTTTTAGACATCTGCATGTAAATACAACCTCTTATttatcacattgtttttcttttttgttttatgtttttaaaagaaaaatctgtgtAAGCGACTGGTTCTGTTCCTATGTTGAGAACTAAGAACTTCAGATGGCCTGTATACATCtttatttctctgtctctctctctctctttctctctctctctcactctctgcctctctctttctctctctgcttttaattcacaatatttaatgttattattgatCACATGTATAGAGTTAACTTTATAACTTCTGTCTGTATAGGTAAGAAGAAAATACTGCTATAAATGCCTACTCAGTGCAAATATTTATCTGTTGATTAAATACAACATGCTGTACAATATCTCTGTTTTAGTATACTACTCTCTTTTAGACTTAGTTTGATAGAGGTAGGGTGTGCTgaaatttattttgtgttattctgATGTGTGGTGCTAGGTAAGTTACTTTTGTGAACAAAACCTTGATTCCTAGACTAGGCCACCCAATTCGTCCTATTAATTTCACTGAGTATtgatgcattattaatattagtactattaataataaaataaataaataaatacatgactaTGATACCCAGCAAGTACCTGTATCAGCGTGCTAGTCTTGGGATAaggcttttctttgttttgttttgttttctcacttTAAGTTTATTAGCAAAGCAGTATTggtttagcaaaaaaaaaaaaaaaaaaaaaaaaaaaaggcagattcacaatatgtgtgtttcagatttcagaaaatGCCTTGATTTGACTTTTGGCTGTAAAACagtattgtgtttctttttcatctcAGTGCAGTCCCTATTGTGAAAACCAGTGGCAGAAGTTGGCACACATGACCAGTGACAAGGATGGTTAAACTGCTTAAACAAACAGAGCGAGGTCCtactttcttttaaatgtgaaattgtcTGAAAGCAGGACATAATTGAATTCCTTTACCTCAGCTGAGGAAACCAAAATTTAGCCTCAATTATTTACAATTCCGTGGCCTCcttaacaaaaccaaacatcTTCAAAAGAGCAGTTTAGCAGCAAAGCAGCTTCAGACGCATTCGTTTTCACATTCAGGCAGTTTTCTAAAGGTTGCCTGCATGCATGTCCAATACCTTTCTGATGGACGTACAAGCAGACACCTCTCTTAAGTGTTATTATACAAAACTTTACAAGACAAATCATTTTCAGAGGTATAAACTTTTCTAGACCTTTAACATTCTTTTTGTAGCCAATATCAGCCAGAATATGCTTGCAATAATAAATGATAACCTCGTTCTGTGCATTGACTCAGGATGCACAAGTTCTAtttaattgttcttattttttatttttatgtttctcttCAATGACGGTGTTTTTGCACACATTAGAAAATTCTGTCTGTCCTTGGTTTTGAACTGTTTCATACTCTGTCTTTACTATCAGCAAAAcgtgttattttcaatgtatgtataacTGTCAAAACCAGTGAAACAAATAGTTAtcttataatacaatatactgtatatcataATGGGTTAAGAAAaaatatatagttttggttggtacaaacaaaagacagatgAAGGGTAAAGAGAGAATATCTCATTTTGTATTCTTAAGCAGACCAGAATAATATCACAGTGTTCAAATTTGCTATGGGTGCATTCTGGTTGACATTAGctagaaaaaaaagatgatcaGTTCAATTCATACAGTAGTATGGatgtctgaaaaagaaaaggacaatcCTCCTTGGATTTTATTGTGTTCAAGAAGAGTATCCAGATACAACTGGATGAACATTTgatcaaatacagaaaattgACTAATGCATTGTATTCCAATAATccaaatgtgtatgtgtatgtaaatCCTTGACAGATGCATATAATACATTTCGATCATCTGTAGCACATTACTTTCTTAAATGTAAGATCAAGGAATAGTTAGGTTCCTTGCTAAAGCAGAAGCAGTCTTGGATCATACAGCCATGGCTATGGTTGTCACAGATGTGTGTGGCAGATGTTTTTGCTACTGATCTTAAAATGGGGACAGAGGATCATGTAACTTTTTATCCAGCTCTTTTAAATTCTCTTTAGGAGTAGTTTCTTCACAATAGTAGTTTTGCTCCTCCTTGTCTGATTcctaaatatacaaaatacgtattttgattcattttgtaaatacagctgtaaagaaaataagaaatttaatgttgtcttttaaatacttttcattcTAATATGAATGTTGTTATATTGTACTTAGAAACTGTACCTTTAATATTACCTTTATTAAAAGTGCATTGGACACATCGATTTTAGATGTGCTTTATGTGCTGTTGTCCCATAATAAAGATTACAGCTTGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33009 True 4001 lncRNA 0.35 2 30402565 30406647

Neighbor

gene id symbol gene type direction distance location
AMCG00007798 rora,LOC103141220,LOC106561150 coding upstream 1462 30388193 ~ 30401103 (+)
AMCG00007797 vps13c coding upstream 359384 29945120 ~ 30043181 (+)
AMCG00007796 NA coding upstream 460734 29929748 ~ 29941831 (+)
AMCG00007787 etfa,LOC107712526,LOC107557988 coding upstream 793968 29586473 ~ 29608597 (+)
AMCG00007784 scaper,LOC106561156 coding upstream 917382 29437666 ~ 29485183 (+)
AMCG00007799 NA coding downstream 2384 30409031 ~ 30429130 (+)
AMCG00007800 anx2a,anxa2,LOC108433632 coding downstream 23193 30429840 ~ 30438133 (+)
AMCG00007802 bnip2,LOC107703138 coding downstream 183567 30590214 ~ 30608023 (+)
AMCG00007806 gtf2a2 coding downstream 203571 30610218 ~ 30613192 (+)
AMCG00007805 otud7a,LOC107715690,LOC107659507,LOC107550219,LOC107752330,LOC107698115,LOC107598848,LOC108275340 coding downstream 324964 30731611 ~ 30774461 (+)
G26262 NA non-coding upstream 598962 29799757 ~ 29803603 (+)
G26249 NA non-coding upstream 661483 29738702 ~ 29741082 (+)
G26243 LOC106587622,LOC106562410 non-coding upstream 673028 29726394 ~ 29729537 (+)
G26196 LOC107575789 non-coding upstream 862503 29539683 ~ 29540062 (+)
G26171 NA non-coding upstream 1026687 29374376 ~ 29375878 (+)
G26360 NA non-coding downstream 103888 30510535 ~ 30522510 (+)
G26430 NA non-coding downstream 537654 30944301 ~ 30945248 (+)
G26429 dnaja4,LOC107659503,LOC104917859 non-coding downstream 538656 30945303 ~ 30946095 (+)
G26433 NA non-coding downstream 548991 30955638 ~ 30955893 (+)
G26458 NA non-coding downstream 693624 31100271 ~ 31100516 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 583013 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 677831 29622311 ~ 29724734 (+)
AMCG00007769 acsbg1 other upstream 1396186 29003095 ~ 29006379 (+)
AMCG00007763 tbc1d2b other upstream 1490999 28900058 ~ 28911566 (+)
AMCG00007754 NA other upstream 1702503 28682171 ~ 28700062 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other downstream 1007507 31414154 ~ 31440378 (+)
AMCG00007854 NA other downstream 3356866 33763513 ~ 33794941 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 5204335 35610982 ~ 35620801 (+)
AMCG00007889 NA other downstream 5889571 36296218 ~ 36302841 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 6797223 37203870 ~ 37216558 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_024240 roraa coding NC_007136.7 CM002909.2 33849647 ~ 33969717 (+)
rainbow trout (Oncorhynchus mykiss) G181040 NA non-coding NC_048566.1 CM023220.2 72456880 ~ 72463212 (+)