G26342


Basic Information

Item Value
gene id G26342
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 30404998 ~ 30454628 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU33039
CAATATATATttTTTCTTAACCCATtatgatatacagtatattgtattataagaTAACTATTTGTTTCACTGGTTTTGACAgttatacatacattgaaaataacacgTTTTGCTGATAGTAAAGACAGAGTATGAAACAGTTCAAAACCAAGGACAGACAGAATTTTCTAATGTGTGCAAAAACACCGTCATTGaagagaaacataaaaataaaaaataagaacaattaaaTAGAACTTGTGCATCCTGAGTCAATGCACAGAACGAGGTTATCATTTATTATTGCAAGCATATTCTGGCTGATATTGGCTACAAAAAGAATGTTAAAGGTCTAGAAAAGTTTATACCTCTGAAAATGATTTGTCTTGTAAAGTTTTGTATAATAACACTTAAGAGAGGTGTCTGCTTGTACGTCCATCAGAAAGGTATTGGACATGCATGCAGGCAACCTTTAGAAAACTGCCTGAATGTGAAAACGAATGCGTCTGAAGCTGCTTTGCTGCTAAACTGCTCTTTTGAAgatgtttggttttgttaagGAGGCCACGGAATTGTAAATAATTGAGGCTAAATTTTGGTTTCCTCAGCTGAGGTAAAGGAATTCAATTATGTCCTGCTTTCAgacaatttcacatttaaaagaaagtaGGACCTCGCTCTGTTTGTTTAAGCAGTTTAACCATCCTTGTCACTGGTCATGTGTGCCAACTTCTGCCACTGGTTTTCACAATAGGGACTGCACTgagatgaaa

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU33039 True 752 lncRNA 0.35 2 30404998 30454628

Neighbor

gene id symbol gene type direction distance location
AMCG00007795 LOC103354956,LOC102781786,LOC102208509 coding downstream 540387 29799746 ~ 29864611 (-)
AMCG00007793 tpm1 coding downstream 630045 29765938 ~ 29774953 (-)
AMCG00007792 tpm1 coding downstream 639143 29757456 ~ 29765855 (-)
AMCG00007790 NA coding downstream 654419 29738738 ~ 29750579 (-)
AMCG00007791 NA coding downstream 669299 29728882 ~ 29735699 (-)
AMCG00007801 foxb1,LOC103353681 coding upstream 54254 30508882 ~ 30509502 (-)
AMCG00007804 NA coding upstream 159361 30613989 ~ 30614885 (-)
AMCG00007803 NA coding upstream 164790 30619418 ~ 30639376 (-)
AMCG00007807 NA coding upstream 356166 30810794 ~ 30830616 (-)
AMCG00007810 rab8b,LOC106609700,LOC107585968,LOC108441837 coding upstream 461732 30916360 ~ 30924500 (-)
G26231 NA non-coding downstream 796402 29608317 ~ 29608596 (-)
G26165 NA non-coding downstream 1038753 29365624 ~ 29366245 (-)
G26147 NA non-coding downstream 1093055 29311618 ~ 29311943 (-)
G26115 NA non-coding downstream 1172290 29230943 ~ 29232708 (-)
G26092 NA non-coding downstream 1355833 29031410 ~ 29049165 (-)
G26370 NA non-coding upstream 155590 30610218 ~ 30611693 (-)
G26403 NA non-coding upstream 345783 30800411 ~ 30875378 (-)
G26416 NA non-coding upstream 449041 30903669 ~ 30903895 (-)
G26598 NA non-coding upstream 1231143 31685771 ~ 31686432 (-)
G26626 NA non-coding upstream 1327010 31781638 ~ 31781891 (-)
AMCG00007768 NA other downstream 1391051 29001049 ~ 29013947 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other downstream 1483875 28894693 ~ 28921123 (-)
AMCG00007704 NA other downstream 3034479 27357731 ~ 27370519 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other downstream 4334150 26053764 ~ 26070848 (-)
AMCG00007684 shf,LOC108430988 other downstream 4773406 25630792 ~ 25631592 (-)
AMCG00007817 NA other upstream 737382 31192010 ~ 31246649 (-)
AMCG00007822 NA other upstream 884088 31338716 ~ 31342792 (-)
AMCG00007835 LOC107594750 other upstream 1350271 31804899 ~ 31816151 (-)
G26961 LOC101154678 other upstream 4414807 34869435 ~ 34869807 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other upstream 5548565 36003193 ~ 36010995 (-)

Expression


Co-expression Network