G26430


Basic Information

Item Value
gene id G26430
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 30944301 ~ 30945248 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU33144
CTTACATACAAAagagtatatttaaataaagttacaTACAACAcctaaattataaatattataccatgaatgttttgtgattttagCAAGAGGAAATAAAGTTCAGGAAAAAATGATTCACTATCTTTTTCACCTTCATAGAAAGCATACATATCCTCATCATCACTTAAGGGCCCTTGAAAAACTTGAAGAAAAAGTTGGTGAATTATGGACAGGGTGGATCTTTTAACTGGCATTtaaagtcaatttaaataatcataacatGCAGTACACCACATGCAGTACACATTCAACATAACCCCATTTCACATTCATTGAGTCTGGCACTGAACCCCGGGTCTTGGTCCTTCGTCTTCCTCGTAGGCCTCGCCACTGTAACTTCTACGCTGGGATTCATGGTCGATTTCGGTGAGGTTAACCTCTTCCATATCATCCGTGATCATCAGTTCATCTCTGGGAGGAAGCAGAGCCTCCACTTTAGGAAGCATATGTGGTGGGAGCCATCCATTTTGAGGGAATGTTAccAAAACTGAATGATCAACTGTCCCTTCTCATAGGGATCTCTGTACACAGGCATACCTTCACTTTGGACACATTtgatgtcattgtgttttatgACTTTTCCTgcaatgaggaaaataaatgtgtgggtGCATGCAACATGTATAATTTAGAACTGATCGTGACAGTttgtaaacaatgtaatttatacAGAACTGTGGTCTTGCTTTGTTACGCTCATCCAAGTGCACAGTTCTTGTACCTACACAGTTATTTGTTTTACCATTAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33144 True 792 lncRNA 0.38 2 30944301 30945248

Neighbor

gene id symbol gene type direction distance location
AMCG00007808 rps27,LOC104929087,LOC106605899,LOC108429942,LOC107084035,LOC100696027 coding upstream 574 30941199 ~ 30943727 (+)
AMCG00007809 LOC107674425 coding upstream 28836 30882916 ~ 30915465 (+)
AMCG00007805 otud7a,LOC107715690,LOC107659507,LOC107550219,LOC107752330,LOC107698115,LOC107598848,LOC108275340 coding upstream 169840 30731611 ~ 30774461 (+)
AMCG00007806 gtf2a2 coding upstream 331109 30610218 ~ 30613192 (+)
AMCG00007802 bnip2,LOC107703138 coding upstream 336278 30590214 ~ 30608023 (+)
AMCG00007816 NA coding downstream 151490 31096738 ~ 31098357 (+)
AMCG00007813 idh2,LOC107714782,LOC107691122,LOC107715227 coding downstream 166397 31111645 ~ 31136247 (+)
AMCG00007818 LOC106573467,LOC106561177 coding downstream 325427 31270675 ~ 31302984 (+)
AMCG00007820 NA coding downstream 359788 31305036 ~ 31317396 (+)
AMCG00007819 NA coding downstream 379834 31325082 ~ 31339183 (+)
G26360 NA non-coding upstream 421791 30510535 ~ 30522510 (+)
G26319 NA non-coding upstream 537654 30402565 ~ 30406647 (+)
G26262 NA non-coding upstream 1140698 29799757 ~ 29803603 (+)
G26249 NA non-coding upstream 1203219 29738702 ~ 29741082 (+)
G26243 LOC106587622,LOC106562410 non-coding upstream 1214764 29726394 ~ 29729537 (+)
G26429 dnaja4,LOC107659503,LOC104917859 non-coding downstream 55 30945303 ~ 30946095 (+)
G26433 NA non-coding downstream 10390 30955638 ~ 30955893 (+)
G26458 NA non-coding downstream 155023 31100271 ~ 31100516 (+)
G26461 NA non-coding downstream 158706 31103954 ~ 31106021 (+)
G26462 NA non-coding downstream 161166 31106414 ~ 31106624 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 1124749 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 1219567 29622311 ~ 29724734 (+)
AMCG00007769 acsbg1 other upstream 1937922 29003095 ~ 29006379 (+)
AMCG00007763 tbc1d2b other upstream 2032735 28900058 ~ 28911566 (+)
AMCG00007754 NA other upstream 2244239 28682171 ~ 28700062 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other downstream 468906 31414154 ~ 31440378 (+)
AMCG00007854 NA other downstream 2818265 33763513 ~ 33794941 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 4665734 35610982 ~ 35620801 (+)
AMCG00007889 NA other downstream 5350970 36296218 ~ 36302841 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 6258622 37203870 ~ 37216558 (+)

Expression


Co-expression Network