G26848


Basic Information

Item Value
gene id G26848
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 33992135 ~ 33993958 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU33638
ttttaaacaagaaaaaaaacaaactggaaaaggTACTGTTTCCAACATCAGTTCTATGATGATATTCCAGTGGTAAAATTGAAGCAAatgatcattcatattttaaaagacacatTTACAAGAAAACTTCAAATATGCAATGTGAGGACTGGTACAtaaccaaacaaagaaacatttcagCTGGTTAAACTTTTTTCTGATGGGAGCTTCAATGCCGGAGAGGGAAAATCCTTGGGAAACTAGGTCTGAACACACAATGTTAATTAAGGGAAACCTCGTCTTCACAGTCAAGCTTAGGAAATgacattaaattatgttttgtgtttcctttGGAAGCTGCAGTGGACTGATAAGAACAGACAAGTTTGTTGGTTTGAGTCCATCTGACTGCACACTGGCCAAAACAGCCCTACATCTTGTGTGCCCTTCATCTGGGAAAATGCtagcagtttaatttaaaacaaagttttaattataatgaaacacagacttccccccccacacaaaattTTATAGCGGAACAACATCAACAAAGAAAGCAGGTTTGTGGGGAGAGAGCTTCTAGTTATTTGATGGgatttttgtaatgaaaaacataaaatcctGTTCTGATCTTGAGATGTGGTCGAGGAATGGCCAGGCATTTCAACTTCGGGGGAAAAGGAATGGGAAAACTAGACTGATTACAAAACAGATCCTCTTTGTTCCTATGGTCTTTTGAGTGTGTTTACCATCAGTTTTGGATTATTCAAGGTGCCCCATTCTCTAAAAAGTACCAGGACATTGCAAACATCTCCTCACAATTTCACCACTGGCCCCCACTCGACCTAACCAGAGGCTGATTCTCTGgcaacacactgactgaaaaccacaatgcctttcttttttttctattgctttACCCTTCAACAGATTACAGTATGTACaaaaatatggttttgttttctttttcgtttgtttttttacaggcACCTGTAGTTGAACTTACGATTCACACCTTAATTAACCCTCTAAAAGgcagtgatttttaaaatgaggATTTATTGAGTAAGGGATGCAGttatacaaaagcaaaaacaaactgaaagatAACACCCCCCACCAAGAATATAAAACCCTAATTATAAGTGAGATGTCTATGGAGTTATATGATGCATTTCACAGCATTCTACATTTCTCTCCCACCACTGCCTTTACAATACCGCTGATTAGATAGGTTTGAATTTGTTGGtagaaatacaatatattaaattgagCAGTGTATCTGGCCAGCAATAAACTGGCTTTTTCATCAACAGGTGCCTATAATTAACCAAACCTTAACTGTAGGGCTTCCTTCTcgattatttataaaaaaataaaaatttaatgaacaaaaaaagaaaaacgagaacaaaaaaaaaaaaacattatgtttGAGGATGTACAGTAAGAGAAATGATAAAATGATCCCAAATGAACTAGAATTGTTTTGTGAGAAAACCAAGAGACTTCAGATACAGAACTTGGAAGATTATACAGTACCAGCCAAACTGTTCAAACAAATGTTGGTTTTCATTTAGTGACACAGAGCTAAAGGCTTTGGTAAGAAAAGAGTCCATTccaaaatatgaagaaaaaaaaagattgtttcaGTAGATCAAGGCCCCTTATTTGTAGCATGTAGGAATGCCAAGcgaaattaaaactaaaaactgcctggaaatgaaatgtataaacCTCAAGTTCATTATTGCAATTTTATGCATTATAAATTCAACTCTTTAAACCTGAGGTTTGCATATACAACTTTTTGAAGAAAATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33638 True 1804 lncRNA 0.35 2 33992135 33993958

Neighbor

gene id symbol gene type direction distance location
AMCG00007859 NA coding downstream 54055 33922475 ~ 33938080 (-)
AMCG00007856 NA coding downstream 178202 33800570 ~ 33813933 (-)
AMCG00007855 NA coding downstream 194375 33790191 ~ 33797760 (-)
AMCG00007852 ap3s2,LOC101163313,LOC107581850,LOC107372361,LOC107654134 coding downstream 235115 33755856 ~ 33757020 (-)
AMCG00007850 ap3s2,LOC102235539 coding downstream 253768 33720494 ~ 33738367 (-)
AMCG00007862 NA coding upstream 1754 33995712 ~ 33999738 (-)
AMCG00007861 NA coding upstream 17152 34011110 ~ 34042896 (-)
AMCG00007869 nr2f2,LOC107690378,LOC107549018 coding upstream 802937 34796895 ~ 34804878 (-)
AMCG00007874 chd2,LOC107715217,LOC107690375 coding upstream 1562292 35556250 ~ 35594137 (-)
AMCG00007875 NA coding upstream 1631852 35625810 ~ 35637920 (-)
G26847 NA non-coding downstream 4144 33986547 ~ 33987991 (-)
G26800 NA non-coding downstream 266239 33725582 ~ 33725896 (-)
G26764 NA non-coding downstream 351799 33592222 ~ 33640336 (-)
G26684 NA non-coding downstream 1574635 32413280 ~ 32417500 (-)
G26646 NA non-coding downstream 2169166 31822742 ~ 31822969 (-)
G26883 mef2a non-coding upstream 195538 34189496 ~ 34223231 (-)
G26893 NA non-coding upstream 255241 34249199 ~ 34253565 (-)
G26943 NA non-coding upstream 802211 34796169 ~ 34796853 (-)
G26952 NA non-coding upstream 822736 34816694 ~ 34816920 (-)
G26994 NA non-coding upstream 1536972 35530930 ~ 35531438 (-)
AMCG00007835 LOC107594750 other downstream 2175984 31804899 ~ 31816151 (-)
AMCG00007822 NA other downstream 2649343 31338716 ~ 31342792 (-)
AMCG00007817 NA other downstream 2745486 31192010 ~ 31246649 (-)
AMCG00007768 NA other downstream 4978188 29001049 ~ 29013947 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other downstream 5071012 28894693 ~ 28921123 (-)
G26961 LOC101154678 other upstream 875477 34869435 ~ 34869807 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other upstream 2009235 36003193 ~ 36010995 (-)
AMCG00007907 NA other upstream 2848517 36842475 ~ 36846583 (-)
AMCG00007929 NA other upstream 3246126 37240084 ~ 37242983 (-)
G27416 blcap,bc10 other upstream 3500953 37494911 ~ 37499392 (-)

Expression


Co-expression Network