G26875


Basic Information

Item Value
gene id G26875
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 34249196 ~ 34253554 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU33671
ttaatattattattgttattattatttaattttatttccttttgtaaCTAGAAAAGTGaaagagacaaacaaaaagGTGTCCTGACATATCTAAGTTAATattctcacatacacacatacacacacagaacatcACACGAGTCAAATAGGACTCATGCTATCATGCTATCAGGTACTTGAtgcaaattgtattgtatttgcaaGAGTCCAATGTATTACAAAGGGGGGTGGGAGAGAAAacgttttttaaataatcatcttAAAATAGATCATTGTAGTCACTGGTCCAGTCTGGCACTTACTTACtatgtaatttttatttcttatttttattttttgttacgtTTGCAAGATACAAACAATCAAAGGAAGTTAAGGGTTGTCCCCACAGACGGGGACTCTTGCTTGCAAATCCCAGCGCGGGGTTCACCTGTCTAACCTGGTGTGACCCCCAGTTACTTTGTTAGAAAGAGAAGAATTCGTCTGTTATTCTTGTGTAAGAGTGAAGAGAAAAGATGCAGATCTCAGAATTGTAAGAGGACTGAGCAATACTGTAAATAGAGATTGGAGAAGGAATCGTCTCCTCGAAAAGCCATGGCTCTCCCAGGGGCTCGAGGTGGTTTCTGGGTGAGGTGGTGTTGTCaccctgttgtgttttgtttgtgtgatgaGTGGAGAGGGCTGTCATCTTATTTGCATGTGCAAAAAAGAAGTCGATATACCTGAAGTGGGTGATCTCTTTGACCACAACCCATTTTCTGAAGAagagaagaaattaaaagttaaaatcaCAGAGGAAAATGCATAAGGAATCAGCATGGGTTCAGAAGTATATTAGtttagaaaagcaaaagcattaAGAGaagtaatatattaatttaaaattggaaATATGTTTGAAAAAGAGGTTGTTTTATGCTCTTACCTTGAAAttttatgaaaaagaaagaaatgacaaataaattacatatattttttattatacgAGACCTCATACCCAATTCAATCgttcatgatatatatataaaaccttaGAATACTTTCACACAGTCTCAgcaatgaattatatatttaagcCAAAGCTGTATGttgatacttttattttgtaggtatggatgtttttctttcatttgggacttttatttttgattcaaattttgtattttgttttgctttaatagaaacaataaaatgacatgCAAGCAAGACCTTGAAACAATAACTGAAGCCATGAACAGTTGCTGTTCtgtttgtaaattgaaatttgagccaaacttttgttttgtttgtttgtttttgtttgtgtatatagcAACTTTAATATATATCACTTATGGTGTAAGTACGTATGTATTGTACCTTCAccagatttaagaaaaaaaaaactatatttttgtgGATTAACGCCAAGTTTACAAGGCGAAGTCCTTATTAAGTAGAGTATTCACTGGTTAATATTTactattttgttaaatatgctGTACTTTcttcaaatttgaattattgttgATAACCGGAGTTTTTTCAGAGGGTAGTGTCTGGGTCGTTCTCCCTTTAATGGTGGTGAATGTCTGTCCTTTAAAATTTGTAATAACAGTGCTGTATGGTTAAGCTTCACTGTATctttttgtaaagaagaattgCAAAGCTTAAGGAAATCTGGAGACAGTTTTTACTGTGGAATTCCGACTTATACCCTTCTATGAGGGATTGGCGTAAAAGCTGCTGAATATACTGCCTACTTTCAGGACTTCGAATCACATGACCGTACACACACGGCTCGGCTTGGCTTTTATCATAACTTCAGtcgaaagaaaaacaaccacaacaaaataacaacagaaaagcaTAATGAATTCCAGTTCACATGTTGTTCTTGTTAGTCTTTACAGTCTACATGCTGTTCAGTGTATTACCCCGTATCAGAGATTAAAAGTTCTGTTTTATGTAACCTTTAGTGTCATTATCAATGCTGACAAGGACTTcctaaagtattttttttccgggtggggctggggggggggtctacaaacatttataaaaaaataaaaaaacaatcatgttaTGTACTgtagaaaaaaatcaaaattttCCTTCGCCATTCAAAATTATTAACTCAATTAATTAGATATAAAAAGTTGTGAGTTTAGAGATAGCGAGTTTTTTTCAGATAATATTTATATGATACACATTGTGAAATAtggtctgtttgtgtgtgtcgtCATACAAATGTATGAAGTGTGTGCGTGTCCTGGGCCGGTCTGAACCAAAAATACCTACAATATTTGACCTCTGTAGATATAATACCATACAATATGATAAAATATCACCATTTACAAgaatttgcattacatttgtgcaataataattataataaaaattgtattttatgctGTTCAGGTTTGAATACAGTTGAACCTTCTCAGTGTATAGGACAATTAATGctcaatttcagtttaattcctcatagatattttgtaaacatttaaaaaaggtttattttgttaGGATACTATCTTTAGAACTCATCTGTAAAAATGAGCTAGTTTTGCAGAGGAAAGGCACTAAAACGTTTAATATTACATCACACAATTCGGAGTGGTTTGCAGAGGCAGGAAATTAAGCagcttaaaataaaagagagaaatccaaacagaagaaacaaaatcgAACCGCTGGATTGCGCATGTACTTGTACGTGAAGTTTGCTGTACAATGTTTTAAAGGAGTATATCCCTTTGCATTTGCTGTCTATTTCCTTGTGTGCCTTTATCAAAAACCACAGgcatcccccccccccgtccTCCCCATCACCCTCGCCACAGCAGCTGATTTTATGCTGATATCGATCTATGCAGTCCCCAGACTTTGCACTTAAAAACCATCCATTTCCCAACAACACGGGGTTACTTCCTAAAAAGACGAGAAAGACCAAACAAGATAATCATCCCGTCACCCGTGTGAGCgcacaccccccacccacatGCGCATACCTACACTTttcaaaaagaaatgaaaaaacaaaaacaattcttGATGAATTGCAAATATGACTGTTAACCCTTTGCCCTTAAGTGCTTGCTTGCTCTATTAAACTGGGATGTTGTGCATCTCGTTTTGGAAAGCAACGCATGACAGCTGATGcacttcagaaaataaaataaaaaaacactaacctCCCACACCATGATCAATTGAATAACAAGTGCTTATGTGTAAGACCAGTAGATACTTTTACCTaccttgttttttgttggtCTCTCCTATTCATTTGTTCTATTTTAGGGCAGCTCTATATAcctacacatgtacacacacacttcctcgATCTGCTACTGACTGACTGTTGCCAGGATCCTTTTAGCCTGGAGTTCACCAGCAGAGATGACTCTTTAGACCAAAATTTACCTTCATTTTATAATGCTTATGACACCGTTTACTATAGGAACCTCATCGAAAAGCCTTTTGAAAGCAATTCAGAAAAATGAAGATGCAAAGTTTTTTTCATGCtcatacttaaataaataaaaatagcagcAATAACTAAAACTGGATCAGTAGCTATTAATTGGCATTCAGGgattattgtttccttttttgtgggTGTAGATTTATTATATAGTCTTGATCCAAAGAATTCATTGCAGTATCACTTTGAGACAAGGTGAGCACCTGATAGGCCATGTTTGACACAGAACTGACTGTATGACAAACTGTTACAGATCAGCAACATATATGAAGAGTACAGACACCCACCCCTCTCCTCCACCACTCCTCTTGTGCTGTTATGACTATGTTGTGTGCACACAAGAAATACATAGTAAATATAAAGACAACCTATATAGGAACGACAAACTCCTTGGGTCTGTTTGCTATTTCTGATCAATCTAACTTGCACAAAAATGTCGAATGTGAAAGAAAgggatatgaaaaaaaaaacgaaaaaaaaaaactttgtagTAAACTTTCTTCACTTTGCTGTGCAAGACTACACTGCTttgctttattgctttttttaaaaaaacgaaaaaaaataactatgtaTTTGGTAACTGTTTGTAGTTAATAGTTCACTCGAAAAGCTGTTTGCGGTTTGAACGCTCAAACCGTTTGGCGGCACAAGCTGGACTTTGTTGCcatgaatgaaacaaaatgtttcagaaatcaAGAGAGAGAATTTTAAGTTAATCTTGCGTTTTATTTCCctgaatgtgttgttttatcttcattatacaataaatattctAATGAACTTTTTATCGAATGACTAAAATATTATGCTAGAGATTGTTGTACAAATTTGTATTATGCATTCACTAAAGTAAAGATATTGG
>TU33673
TCCCGTTTTATtataagaattattattaatattattattgttattattatttaattttatttccttttgtaaCTAGAAAAGTGaaagagacaaacaaaaagGTGTCCTGACATATCTAAGTTAATattctcacatacacacatacacacacagaacatcACACGAGTCAAATAGGACTCATGCTATCATGCTATCAGGTACTTGAtgcaaattgtattgtatttgcaaGAGTCCAATGTATTACAAAGGGGGGTGGGAGAGAAAacgttttttaaataatcatcttAAAATAGATCATTGTAGTCACTGGTCCAGTCTGGCACTTACTTACtatgtaatttttatttcttatttttattttttgttacgtTTGCAAGATACAAACAATCAAAGGAAGTTAAGGGTTGTCCCCACAGACGGGGACTCTTGCTTGCAAATCCCAGCGCGGGGTTCACCTGTCTAACCTGGTGTGACCCCCAGTTACTTTGTTAGAAAGAGAAGAATTCGTCTGTTATTCTTGTGTAAGAGTGAAGAGAAAAGATGCAGATCTCAGAATTGTAAGAGGACTGAGCAATACTGTAAATAGAGATTGGAGAAGGAATCGTCTCCTCGAAAAGCCATGGCTCTCCCAGGGGCTCGAGGTGGTTTCTGGGTGAGGTGGTGTTGTCaccctgttgtgttttgtttgtgtgatgaGTGGAGAGGGCTGTCATCTTATTTGCATGTGCAAAAAAGAAGTCGATATACCTGAAGTGGGTGATCTCTTTGACCACAACCCATTTTCTGAAGAagagaagaaattaaaagttaaaatcaCAGAGGAAAATGCATAAGGAATCAGCATGGGTTCAGAAGTATATTAGtttagaaaagcaaaagcattaAGAGaagtaatatattaatttaaaattggaaATATGTTTGAAAAAGAGGTTGTTTTATGCTCTTACCTTGAAAttttatgaaaaagaaagaaatgacaaataaattacatatattttttattatacgAGACCTCATACCCAATTCAATCgttcatgatatatatataaaaccttaGAATACTTTCACACAGTCTCAgcaatgaattatatatttaagcCAAAGCTGTATGttgatacttttattttgtaggtatggatgtttttctttcatttgggacttttatttttgattcaaattttgtattttgttttgctttaatagaaacaataaaatgacatgCAAGCAAGACCTTGAAACAATAACTGAAGCCATGAACAGTTGCTGTTCtgtttgtaaattgaaatttgagccaaacttttgttttgtttgtttgtttttgtttgtgtatatagcAACTTTAATATATATCACTTATGGTGTAAGTACGTATGTATTGTACCTTCAccagatttaagaaaaaaaaaactatatttttgtgGATTAACGCCAAGTTTACAAGGCGAAGTCCTTATTAAGTAGAGTATTCACTGGTTAATATTTactattttgttaaatatgctGTACTTTcttcaaatttgaattattgttgATAACCGGAGTTTTTTCAGAGGGTAGTGTCTGGGTCGTTCTCCCTTTAATGGTGGTGAATGTCTGTCCTTTAAAATTTGTAATAACAGTGCTGTATGGTTAAGCTTCACTGTATctttttgtaaagaagaattgCAAAGCTTAAGGAAATCTGGAGACAGTTTTTACTGTGGAATTCCGACTTATACCCTTCTATGAGGGATTGGCGTAAAAGCTGCTGAATATACTGCCTACTTTCAGGACTTCGAATCACATGACCGTACACACACGGCTCGGCTTGGCTTTTATCATAACTTCAGtcgaaagaaaaacaaccacaacaaaataacaacagaaaagcaTAATGAATTCCAGTTCACATGTTGTTCTTGTTAGTCTTTACAGTCTACATGCTGTTCAGTGTATTACCCCGTATCAGAGATTAAAAGTTCTGTTTTATGTAACCTTTAGTGTCATTATCAATGCTGACAAGGACTTcctaaagtattttttttccgggtggggctggggggggggtctacaaacatttataaaaaaataaaaaaacaatcatgttaTGTACTgtagaaaaaaatcaaaattttCCTTCGCCATTCAAAATTATTAACTCAATTAATTAGATATAAAAAGTTGTGAGTTTAGAGATAGCGAGTTTTTTTCAGATAATATTTATATGATACACATTGTGAAATAtggtctgtttgtgtgtgtcgtCATACAAATGTATGAAGTGTGTGCGTGTCCTGGGCCGGTCTGAACCAAAAATACCTACAATATTTGACCTCTGTAGATATAATACCATACAATATGATAAAATATCACCATTTACAAgaatttgcattacatttgtgcaataataattataataaaaattgtattttatgctGTTCAGGTTTGAATACAGTTGAACCTTCTCAGTGTATAGGACAATTAATGctcaatttcagtttaattcctcatagatattttgtaaacatttaaaaaaggtttattttgttaGGATACTATCTTTAGAACTCATCTGTAAAAATGAGCTAGTTTTGCAGAGGAAAGGCACTAAAACGTTTAATATTACATCACACAATTCGGAGTGGTTTGCAGAGGCAGGAAATTAAGCagcttaaaataaaagagagaaatccaaacagaagaaacaaaatcgAACCGCTGGATTGCGCATGTACTTGTACGTGAAGTTTGCTGTACAATGTTTTAAAGGAGTATATCCCTTTGCATTTGCTGTCTATTTCCTTGTGTGCCTTTATCAAAAACCACAGgcatcccccccccccgtccTCCCCATCACCCTCGCCACAGCAGCTGATTTTATGCTGATATCGATCTATGCAGTCCCCAGACTTTGCACTTAAAAACCATCCATTTCCCAACAACACGGGGTTACTTCCTAAAAAGACGAGAAAGACCAAACAAGATAATCATCCCGTCACCCGTGTGAGCgcacaccccccacccacatGCGCATACCTACACTTttcaaaaagaaatgaaaaaacaaaaacaattcttGATGAATTGCAAATATGACTGTTAACCCTTTGCCCTTAAGTGCTTGCTTGCTCTATTAAACTGGGATGTTGTGCATCTCGTTTTGGAAAGCAACGCATGACAGCTGATGcacttcagaaaataaaataaaaaaacactaacctCCCACACCATGATCAATTGAATAACAAGTGCTTATGTGTAAGACCAGTAGATACTTTTACCTaccttgttttttgttggtCTCTCCTATTCATTTGTTCTATTTTAGGGCAGCTCTATATAcctacacatgtacacacacacttcctcgATCTGCTACTGACTGACTGTTGCCAGGATCCTTTTAGCCTGGAGTTCACCAGCAGAGATGACTCTTTAGACCAAAATTTACCTTCATTTTATAATGCTTATGACACCGTTTACTATAGGAACCTCATCGAAAAGCCTTTTGAAAGCAATTCAGAAAAATGAAGATGCAAAGTTTTTTTCATGCtcatacttaaataaataaaaatagcagcAATAACTAAAACTGGATCAGTAGCTATTAATTGGCATTCAGGgattattgtttccttttttgtgggTGTAGATTTATTATATAGTCTTGATCCAAAGAATTCATTGCAGTATCACTTTGAGACAAGGTGAGCACCTGATAGGCCATGTTTGACACAGAACTGACTGTATGACAAACTGTTACAGATCAGCAACATATATGAAGAGTACAGACACCCACCCCTCTCCTCCACCACTCCTCTTGTGCTGTTATGACTATGTTGTGTGCACACAAGAAATACATAGTAAATATAAAGACAACCTATATAGGAACGACAAACTCCTTGGGTCTGTTTGCTATTTCTGATCAATCTAACTTGCACAAAAATGTCGAATGTGAAAGAAAgggatatgaaaaaaaaaacgaaaaaaaaaaactttgtagTAAACTTTCTTCACTTTGCTGTGCAAGACTACACTGCTttgctttattgctttttttaaaaaaacgaaaaaaaataactatgtaTTTGGTAACTGTTTGTAGTTAATAGTTCACTCGAAAAGCTGTTTGCGGTTTGAACGCTCAAACCGTTTGGCGGCACAAGCTGGACTTTGTTGCcatgaatgaaacaaaatgtttcagaaatcaAGAGAGAGAATTTTAAGTTAATCTTGCGTTTTATTTCCctgaatgtgttgttttatcttcattatacaataaatattctAATGAACTTTTTATCGAATGACTAAAATATTATGCTAGAGATTGTTGTACAAATTTGTATTATGCATTCACTAAAGTAAAGATATTGG

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:0051186 obsolete cofactor metabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0051188 obsolete cofactor biosynthetic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0017144 drug metabolic process biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33671 False 4334 lncRNA 0.35 1 34249221 34253554
TU33673 True 4359 lncRNA 0.35 1 34249196 34253554

Neighbor

gene id symbol gene type direction distance location
AMCG00007866 mef2a coding upstream 121 34240836 ~ 34249075 (+)
AMCG00007865 LOC107715609 coding upstream 23555 34222899 ~ 34225641 (+)
AMCG00007864 NA coding upstream 165875 34065131 ~ 34083321 (+)
AMCG00007863 lrrc28,LOC107706938,LOC107563201,LOC107662304,LOC107690794 coding upstream 197006 34044612 ~ 34052190 (+)
AMCG00007860 NA coding upstream 238645 34001037 ~ 34010551 (+)
AMCG00007868 NA coding downstream 18209 34271763 ~ 34325416 (+)
AMCG00007867 NA coding downstream 94933 34348487 ~ 34353634 (+)
AMCG00007870 NA coding downstream 968910 35222464 ~ 35228724 (+)
AMCG00007871 NA coding downstream 1067065 35320619 ~ 35323890 (+)
AMCG00007872 LOC106561144,LOC106573775 coding downstream 1284007 35537561 ~ 35548907 (+)
G26825 NA non-coding upstream 255214 33992178 ~ 33993982 (+)
G26826 NA non-coding upstream 258608 33989046 ~ 33990588 (+)
G26704 NA non-coding upstream 1361156 32887790 ~ 32888040 (+)
G26698 NA non-coding upstream 1626666 32622260 ~ 32622530 (+)
G26645 NA non-coding upstream 2426223 31822740 ~ 31822973 (+)
G26895 NA non-coding downstream 12567 34266121 ~ 34266418 (+)
G26923 NA non-coding downstream 372408 34625962 ~ 34626229 (+)
G26933 NA non-coding downstream 537202 34790756 ~ 34793855 (+)
G26934 NA non-coding downstream 540376 34793930 ~ 34794542 (+)
G26935 NA non-coding downstream 541046 34794600 ~ 34796095 (+)
AMCG00007854 NA other upstream 454255 33763513 ~ 33794941 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 2808818 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 4429644 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 4524462 29622311 ~ 29724734 (+)
AMCG00007769 acsbg1 other upstream 5242817 29003095 ~ 29006379 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 1357428 35610982 ~ 35620801 (+)
AMCG00007889 NA other downstream 2042664 36296218 ~ 36302841 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 2950316 37203870 ~ 37216558 (+)
G27518 NA other downstream 3891430 38144984 ~ 38146850 (+)
AMCG00007952 romo1,LOC102788570 other downstream 3915016 38168570 ~ 38170146 (+)

Expression


Co-expression Network