G26883 (mef2a)


Basic Information

Item Value
gene id G26883
gene name mef2a
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 34189496 ~ 34223231 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU33689
ATTTTATGATTTCTCATCATATTATCAAACTCctcattaatttttttatatttttcttctgtgtgaGGGGTGAGGACATATGAAGCATCGGGGTCCGGGCTATCACAGCCTCTGTGTTCTTTCTTGTTTAGCGCCTCCACGATGTCCGAGTTGGTTCTGCTCTCATGGGGCTCATTGTACTCTGTGTATTTCAGTAGAACTTTGTCCATGTCAGTGCTTGCGTACTGAAAGAGTTTGTTTGAACTGTTAAAAATGATCAACGCTATCTCACAGTCACACAGTACGCTCAGTTCGTAAGCCTTCTTCATCAATCCAAACTTCCTCTTCGTAAACGTGACCTGC

Function

symbol description
mef2a Enables several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; enzyme binding activity; and protein heterodimerization activity. Involved in several processes, including ERK5 cascade; positive regulation of cardiac muscle hypertrophy; and regulation of transcription by RNA polymerase II. Located in cytosol and nucleoplasm. Part of transcription regulator complex. Implicated in dilated cardiomyopathy.

NR:

description
PREDICTED: myocyte-specific enhancer factor 2A isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33689 True 342 lncRNA 0.42 2 34189496 34223231

Neighbor

gene id symbol gene type direction distance location
AMCG00007861 NA coding downstream 146600 34011110 ~ 34042896 (-)
AMCG00007862 NA coding downstream 189758 33995712 ~ 33999738 (-)
AMCG00007859 NA coding downstream 251416 33922475 ~ 33938080 (-)
AMCG00007856 NA coding downstream 375563 33800570 ~ 33813933 (-)
AMCG00007855 NA coding downstream 391736 33790191 ~ 33797760 (-)
AMCG00007869 nr2f2,LOC107690378,LOC107549018 coding upstream 573664 34796895 ~ 34804878 (-)
AMCG00007874 chd2,LOC107715217,LOC107690375 coding upstream 1333019 35556250 ~ 35594137 (-)
AMCG00007875 NA coding upstream 1402579 35625810 ~ 35637920 (-)
AMCG00007876 LOC107601651,LOC107690372,LOC103369184 coding upstream 1426613 35649844 ~ 35665471 (-)
AMCG00007877 LOC105016671,LOC103369184,LOC102786692,LOC101476567,LOC102297530,LOC100700148,LOC106588105 coding upstream 1494793 35718024 ~ 35735817 (-)
G26848 NA non-coding downstream 195538 33992135 ~ 33993958 (-)
G26847 NA non-coding downstream 201505 33986547 ~ 33987991 (-)
G26800 NA non-coding downstream 463600 33725582 ~ 33725896 (-)
G26764 NA non-coding downstream 549160 33592222 ~ 33640336 (-)
G26684 NA non-coding downstream 1771996 32413280 ~ 32417500 (-)
G26893 NA non-coding upstream 25968 34249199 ~ 34253565 (-)
G26943 NA non-coding upstream 572938 34796169 ~ 34796853 (-)
G26952 NA non-coding upstream 593463 34816694 ~ 34816920 (-)
G26994 NA non-coding upstream 1307699 35530930 ~ 35531438 (-)
G26995 NA non-coding upstream 1314073 35537304 ~ 35537636 (-)
AMCG00007835 LOC107594750 other downstream 2373345 31804899 ~ 31816151 (-)
AMCG00007822 NA other downstream 2846704 31338716 ~ 31342792 (-)
AMCG00007817 NA other downstream 2942847 31192010 ~ 31246649 (-)
AMCG00007768 NA other downstream 5175549 29001049 ~ 29013947 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other downstream 5268373 28894693 ~ 28921123 (-)
G26961 LOC101154678 other upstream 646204 34869435 ~ 34869807 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other upstream 1779962 36003193 ~ 36010995 (-)
AMCG00007907 NA other upstream 2619244 36842475 ~ 36846583 (-)
AMCG00007929 NA other upstream 3016853 37240084 ~ 37242983 (-)
G27416 blcap,bc10 other upstream 3271680 37494911 ~ 37499392 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012803 mef2aa coding NC_007129.7 CM002902.2 23187419 ~ 23356077 (+)
grasscarp (Ctenopharyngodon idella) CI01000013_02321895_02371964 MEF2A, MEF2AA coding CI01000013 null 2321895 ~ 2371964 (-)