G26893


Basic Information

Item Value
gene id G26893
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 34249199 ~ 34253565 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU33700
CACAGTAAAAGCCAATATCTTTACTTTAGTGAATGCATAATACAAATTTGTACAACAATCTCTAGCATAATATTTTAGTCATTCGATAAAAAGTTCATTagaatatttattgtataatgaagataaaacaacacattcagGGAAATAAAACGCAAGATTAACTTAAAATTCTCTCTCTtgatttctgaaacattttgtttcattcatgGCAACAAAGTCCAGCTTGTGCCGCCAAACGGTTTGAGCGTTCAAACCGCAAACAGCTTTTCGAGTGAACTATTAACTACAAACAGTTACCAAAtacatagttattttttttcgtttttttaaaaaaagcaataaagcaaAGCAGTGTAGTCTTGCACAGCAAAGTGAAGAAAGTTTActacaaagtttttttttttcgttttttttttcatatcccTTTCTTTCACATTCGACATTTTTGTGCAAGTTAGATTGATCAGAAATAGCAAACAGACCCAAGGAGTTTGTCGTTCCTATATAGGTTGTCTTTATATTTACTATGTATTTCTTGTGTGCACACAACATAGTCATAACAGCACAAGAGGAGTGGTGGAGGAGAGGGGTGGGTGTCTGTACTCTTCATATATGTTGCTGATCTGTAACAGTTTGTCATACAGTCAGTTCTGTGTCAAACATGGCCTATCAGGTGCTCACCTTGTCTCAAAGTGATACTGCAATGAATTCTTTGGATCAAGACTATATAATAAATCTACAcccacaaaaaaggaaacaataatcCCTGAATGCCAATTAATAGCTACTGATCCAGTTTTAGTTATTgctgctatttttatttatttaagtatgaGCATGAAAAAAACTTTGCATCTTCATTTTTCTGAATTGCTTTCAAAAGGCTTTTCGATGAGGTTCCTATAGTAAACGGTGTCATAAGCATTATAAAATGAAGGTAAATTTTGGTCTAAAGAGTCATCTCTGCTGGTGAACTCCAGGCTAAAAGGATCCTGGCAACAGTCAGTCAGTAGCAGATcgaggaagtgtgtgtgtacatgtgtaggTATATAGAGCTGCCCTAAAATAGAACAAATGAATAGGAGAGaccaacaaaaaacaaggtAGGTAAAAGTATCTACTGGTCTTACACATAAGCACTTGTTATTCAATTGATCATGGTGTGGGaggttagtgtttttttattttattttctgaagtgCATCAGCTGTCATGCGTTGCTTTCCAAAACGAGATGCACAACATCCCAGTTTAATAGAGCAAGCAAGCACTTAAGGGCAAAGGGTTAACAGTCATATTTGCAATTCATCaagaattgtttttgttttttcatttctttttgaaAAGTGTAGGTATGCGCatgtgggtggggggtgtgcGCTCACACGGGTGACGGGATGATTATCTTGTTTGGTCTTTCTCGTCTTTTTAGGAAGTAACCCCGTGTTGTTGGGAAATGGATGGTTTTTAAGTGCAAAGTCTGGGGACTGCATAGATCGATATCAGCATAAAATCAGCTGCTGTGGCGAGGGTGATGGGGAggacgggggggggggatgcCTGTGGTTTTTGATAAAGGCACACAAGGAAATAGACAGCAAATGCAAAGGGATATACTCCTTTAAAACATTGTACAGCAAACTTCACGTACAAGTACATGCGCAATCCAGCGGTTcgattttgtttcttctgtttggatttctctcttttattttaagctGCTTAATTTCCTGCCTCTGCAAACCACTCCGAATTGTGTGATGTAATATTAAACGTTTTAGTGCCTTTCCTCTGCAAAACTAGCTCATTTTTACAGATGAGTTCTAAAGATAGTATCCtaacaaaataaaccttttttaaatgtttacaaaatatctatgaggaattaaactgaaattgagCATTAATTGTCCTATACACTGAGAAGGTTCAACTGTATTCAAACCTGAACagcataaaatacaatttttattataattattattgcacaaatgtaatgcaaattcTTGTAAATGGTGATATTTTATCATATTGTATGGTATTATATCTACAGAGGTCAAATATTGTAGGTATTTTTGGTTCAGACCGGCCCAGGACACGCACACACTTCATACATTTGTATGacgacacacacaaacagaccaTATTTCACAATGTGTATCATATAAATATTATCTGAAAAAAACTCGCTATCTCTAAACTCACAACTTTTTATATCTAATTAATTGAGTTAATAATTTTGAATGGCGAAGGaaaattttgatttttttctacAGTACAtaacatgattgtttttttatttttttataaatgtttgtagaccccccccccagccccacccggaaaaaaaatactttaggAAGTCCTTGTCAGCATTGATAATGACACTAAAGGTTACATAAAACAGAACTTTTAATCTCTGATACGGGGTAATACACTGAACAGCATGTAGACTGTAAAGACTAACAAGAACAACATGTGAACTGGAATTCATTAtgcttttctgttgttattttgttgtggttgtttttctttcgaCTGAAGTTATGATAAAAGCCAAGCCGAGCCGTGTGTGTACGGTCATGTGATTCGAAGTCCTGAAAGTAGGCAGTATATTCAGCAGCTTTTACGCCAATCCCTCATAGAAGGGTATAAGTCGGAATTCCACAGTAAAAACTGTCTCCAGATTTCCTTAAGCTTTGcaattcttctttacaaaaagATACAGTGAAGCTTAACCATACAGCACTGTTATTACAAATTTTAAAGGACAGACATTCACCACCATTAAAGGGAGAACGACCCAGACACTACCCTCTGAAAAAACTCCGGTTATcaacaataattcaaatttgaagAAAGTACagcatatttaacaaaatagtAAATATTAACCAGTGAATACTCTACTTAATAAGGACTTCGCCTTGTAAACTTGGCGTTAATCcacaaaaatatagttttttttttcttaaatctggTGAAGGTACAATACATACGTACTTACACCATAAGTGATATATATTAAAGTTgctatatacacaaacaaaaacaaacaaacaaaacaaaagtttggctcaaatttcaatttacaaacaGAACAGCAACTGTTCATGGCTTCAGTTATTGTTTCAAGGTCTTGCTTGcatgtcattttattgtttctattaaagcaaaacaaaatacaaaatttgaatcaaaaataaaagtcccaaatgaaagaaaaacatccatacctacaaaataaaagtatcaaCATACAGCTTTGgcttaaatatataattcattgcTGAGACTGTGTGAAAGTATTCtaaggttttatatatatatcatgaacGATTGAATTGGGTATGAGGTCTcgtataataaaaaatatatgtaatttatttgtcatttctttctttttcataaaaTTTCAAGGTAAGAGCATAAAACAACCTCTTTTTCAAACATATttccaattttaaattaatatattacttCTCTtaatgcttttgcttttctaaaCTAATATACTTCTGAACCCATGCTGATTCCTTATGCATTTTCCTCTGtgattttaacttttaatttcttctctTCTTCAGAAAATGGGTTGTGGTCAAAGAGATCACCCACTTCAGGTATATCGACTTCTTTTTTGCACATGCAAATAAGATGACAGCCCTCTCCACtcatcacacaaacaaaacacaacagggtGACAACACCACCTCACCCAGAAACCACCTCGAGCCCCTGGGAGAGCCATGGCTTTTCGAGGAGACGATTCCTTCTCCAATCTCTATTTACAGTATTGCTCAGTCCTCTTACAATTCTGAGATCTGCATCTTTTCTCTTCACTCTTACACAAGAATAACAGACGAATTCTTCTCTTTCTAACAAAGTAACTGGGGGTCACACCAGGTTAGACAGGTGAACCCCGCGCTGGGATTTGCAAGCAAGAGTCCCCGTCTGTGGGGACAACCCTTAACTTCCTTTGATTGTTTGTATCTTGCAAacgtaacaaaaaataaaaataagaaataaaaattacataGTAAGTAAGTGCCAGACTGGACCAGTGACTACAATGATCTATTTTaagatgattatttaaaaaacgtTTTCTCTCCCACCCCCCTTTGTAATACATTGGACTCttgcaaatacaatacaatttgcaTCAAGTACCTGATAGCATGATAGCATGAGTCCTATTTGACTCGTGTgatgttctgtgtgtgtatgtgtgtatgtgagaatATTAACTTAGATATGTCAGGACACctttttgtttgtctctttCACTTTTCTAGttacaaaaggaaataaaattaaataataataacaataataatattaataataattcttataATAAAACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33700 True 4367 lncRNA 0.35 1 34249199 34253565

Neighbor

gene id symbol gene type direction distance location
AMCG00007861 NA coding downstream 206303 34011110 ~ 34042896 (-)
AMCG00007862 NA coding downstream 249461 33995712 ~ 33999738 (-)
AMCG00007859 NA coding downstream 311119 33922475 ~ 33938080 (-)
AMCG00007856 NA coding downstream 435266 33800570 ~ 33813933 (-)
AMCG00007855 NA coding downstream 451439 33790191 ~ 33797760 (-)
AMCG00007869 nr2f2,LOC107690378,LOC107549018 coding upstream 543330 34796895 ~ 34804878 (-)
AMCG00007874 chd2,LOC107715217,LOC107690375 coding upstream 1302685 35556250 ~ 35594137 (-)
AMCG00007875 NA coding upstream 1372245 35625810 ~ 35637920 (-)
AMCG00007876 LOC107601651,LOC107690372,LOC103369184 coding upstream 1396279 35649844 ~ 35665471 (-)
AMCG00007877 LOC105016671,LOC103369184,LOC102786692,LOC101476567,LOC102297530,LOC100700148,LOC106588105 coding upstream 1464459 35718024 ~ 35735817 (-)
G26883 mef2a non-coding downstream 25968 34189496 ~ 34223231 (-)
G26848 NA non-coding downstream 255241 33992135 ~ 33993958 (-)
G26847 NA non-coding downstream 261208 33986547 ~ 33987991 (-)
G26800 NA non-coding downstream 523303 33725582 ~ 33725896 (-)
G26764 NA non-coding downstream 608863 33592222 ~ 33640336 (-)
G26943 NA non-coding upstream 542604 34796169 ~ 34796853 (-)
G26952 NA non-coding upstream 563129 34816694 ~ 34816920 (-)
G26994 NA non-coding upstream 1277365 35530930 ~ 35531438 (-)
G26995 NA non-coding upstream 1283739 35537304 ~ 35537636 (-)
G26997 NA non-coding upstream 1297306 35550871 ~ 35552507 (-)
AMCG00007835 LOC107594750 other downstream 2433048 31804899 ~ 31816151 (-)
AMCG00007822 NA other downstream 2906407 31338716 ~ 31342792 (-)
AMCG00007817 NA other downstream 3002550 31192010 ~ 31246649 (-)
AMCG00007768 NA other downstream 5235252 29001049 ~ 29013947 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other downstream 5328076 28894693 ~ 28921123 (-)
G26961 LOC101154678 other upstream 615870 34869435 ~ 34869807 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other upstream 1749628 36003193 ~ 36010995 (-)
AMCG00007907 NA other upstream 2588910 36842475 ~ 36846583 (-)
AMCG00007929 NA other upstream 2986519 37240084 ~ 37242983 (-)
G27416 blcap,bc10 other upstream 3241346 37494911 ~ 37499392 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G30092 NA non-coding CI01000004 null 9245751 ~ 9245958 (-)
rainbow trout (Oncorhynchus mykiss) mef2aa mef2a misc NC_048565.1 CM023219.2 29188958 ~ 29316547 (+)