G26960 (LOC101154678)


Basic Information

Item Value
gene id G26960
gene name LOC101154678
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 34869444 ~ 34869722 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU33770
cagacatgagttcaatctttgtttcatcagaccagagaattttgtttctcatggtctgagagtccttcaggtgccttttggcaaactccaggtgggctgtcatgtgccttttactgaggagtggcttccgtctggccactctaccatacaggcctgattggtggagtgctgcagagatggttgttcttctggaaggttctcctctctccacagagacacgctggagctctgtcagagtgaccatcgggttcttggtcacctccctgactaaggcccttc

Function

NR:

description
transposase, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33770 True 279 lncRNA 0.51 1 34869444 34869722

Neighbor

gene id symbol gene type direction distance location
AMCG00007867 NA coding upstream 515810 34348487 ~ 34353634 (+)
AMCG00007868 NA coding upstream 544028 34271763 ~ 34325416 (+)
AMCG00007866 mef2a coding upstream 620369 34240836 ~ 34249075 (+)
AMCG00007865 LOC107715609 coding upstream 643803 34222899 ~ 34225641 (+)
AMCG00007864 NA coding upstream 786123 34065131 ~ 34083321 (+)
AMCG00007870 NA coding downstream 352742 35222464 ~ 35228724 (+)
AMCG00007871 NA coding downstream 450897 35320619 ~ 35323890 (+)
AMCG00007872 LOC106561144,LOC106573775 coding downstream 667839 35537561 ~ 35548907 (+)
AMCG00007878 si:dkeyp-59c12.1,LOC106561194,LOC108431221,LOC107690407,LOC107549016,LOC107715600,LOC107693031 coding downstream 942004 35811726 ~ 35815067 (+)
AMCG00007881 NA coding downstream 990909 35860631 ~ 35931488 (+)
G26951 NA non-coding upstream 54055 34815160 ~ 34815389 (+)
G26935 NA non-coding upstream 73349 34794600 ~ 34796095 (+)
G26934 NA non-coding upstream 74902 34793930 ~ 34794542 (+)
G26933 NA non-coding upstream 75589 34790756 ~ 34793855 (+)
G26923 NA non-coding upstream 243215 34625962 ~ 34626229 (+)
G26978 NA non-coding downstream 420314 35290036 ~ 35290245 (+)
G26993 NA non-coding downstream 681120 35550842 ~ 35552503 (+)
G26998 NA non-coding downstream 686423 35556145 ~ 35559559 (+)
G27021 NA non-coding downstream 725691 35595413 ~ 35603182 (+)
G27025 NA non-coding downstream 738701 35608423 ~ 35608637 (+)
AMCG00007854 NA other upstream 1074503 33763513 ~ 33794941 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 3429066 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 5049892 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 5144710 29622311 ~ 29724734 (+)
AMCG00007769 acsbg1 other upstream 5863065 29003095 ~ 29006379 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 741260 35610982 ~ 35620801 (+)
AMCG00007889 NA other downstream 1426496 36296218 ~ 36302841 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 2334148 37203870 ~ 37216558 (+)
G27518 NA other downstream 3275262 38144984 ~ 38146850 (+)
AMCG00007952 romo1,LOC102788570 other downstream 3298848 38168570 ~ 38170146 (+)

Expression


Co-expression Network