G26995


Basic Information

Item Value
gene id G26995
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 35537304 ~ 35537636 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU33806
CTGCCGGAAAAAGGTAAAGAAAGACCGTGAGGATCTTGCCGACTTCTAGCGCCGAAGGTCCTGCCCCTTTCCCCATAACCATCCATCCAGCACGGGCTCgcacctctctcctctccctgctcAAGAGAGGCGGACAGACTCAATCAGGAGATGAACTTGTGTCATGGTGGTTTAAGGTTGCAAATCCAGGCAGGAAGGCAAAGCAGCGAAGGCGGAAGGCGAGCAGCGACGGAAAACCATCCCTTCGGATCAGAATGAAAAACTAATCAAGTCTAAATGTGGCGGAGCGAAGTGTATTTTCCGTccctttcctctcctctgcCTTCCCTCCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33806 True 333 lncRNA 0.53 1 35537304 35537636

Neighbor

gene id symbol gene type direction distance location
AMCG00007869 nr2f2,LOC107690378,LOC107549018 coding downstream 732426 34796895 ~ 34804878 (-)
AMCG00007861 NA coding downstream 1494408 34011110 ~ 34042896 (-)
AMCG00007862 NA coding downstream 1537566 33995712 ~ 33999738 (-)
AMCG00007859 NA coding downstream 1599224 33922475 ~ 33938080 (-)
AMCG00007856 NA coding downstream 1723371 33800570 ~ 33813933 (-)
AMCG00007874 chd2,LOC107715217,LOC107690375 coding upstream 18614 35556250 ~ 35594137 (-)
AMCG00007875 NA coding upstream 88174 35625810 ~ 35637920 (-)
AMCG00007876 LOC107601651,LOC107690372,LOC103369184 coding upstream 112208 35649844 ~ 35665471 (-)
AMCG00007877 LOC105016671,LOC103369184,LOC102786692,LOC101476567,LOC102297530,LOC100700148,LOC106588105 coding upstream 180388 35718024 ~ 35735817 (-)
AMCG00007880 NA coding upstream 302517 35840153 ~ 35852765 (-)
G26994 NA non-coding downstream 5866 35530930 ~ 35531438 (-)
G26952 NA non-coding downstream 720384 34816694 ~ 34816920 (-)
G26943 NA non-coding downstream 740451 34796169 ~ 34796853 (-)
G26893 NA non-coding downstream 1283739 34249199 ~ 34253565 (-)
G26883 mef2a non-coding downstream 1314073 34189496 ~ 34223231 (-)
G26997 NA non-coding upstream 13235 35550871 ~ 35552507 (-)
G27023 NA non-coding upstream 57794 35595430 ~ 35603175 (-)
G27107 NA non-coding upstream 489087 36026723 ~ 36026983 (-)
G27109 NA non-coding upstream 491833 36029469 ~ 36030312 (-)
G27123 NA non-coding upstream 564670 36102306 ~ 36149276 (-)
G26961 LOC101154678 other downstream 667497 34869435 ~ 34869807 (-)
AMCG00007835 LOC107594750 other downstream 3721153 31804899 ~ 31816151 (-)
AMCG00007822 NA other downstream 4194512 31338716 ~ 31342792 (-)
AMCG00007817 NA other downstream 4290655 31192010 ~ 31246649 (-)
AMCG00007768 NA other downstream 6523357 29001049 ~ 29013947 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other upstream 465557 36003193 ~ 36010995 (-)
AMCG00007907 NA other upstream 1304839 36842475 ~ 36846583 (-)
AMCG00007929 NA other upstream 1702448 37240084 ~ 37242983 (-)
G27416 blcap,bc10 other upstream 1957275 37494911 ~ 37499392 (-)
G27437 NA other upstream 2029981 37567617 ~ 37569284 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_01474110_01481148 RGMA coding CI01000013 null 1473790 ~ 1481692 (-)
eurasian perch (Perca fluviatilis) G136090 cap1,LOC102788241 non-coding NC_053124.1 CM020921.1 24729924 ~ 24744868 (-)
tiger barb (Puntius tetrazona) G123868 rgma,LOC107690376,LOC107715612,LOC107715216,LOC107693037 non-coding NC_056716.1 CM032085.1 2445601 ~ 2449435 (+)