G27021


Basic Information

Item Value
gene id G27021
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 35595413 ~ 35603182 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU33836
cccaagaaatgcagaaatgtgaAGGAAAATTTTATTGAACAATTTAAAGCAGTCCAAATATCcgacaattaaaattacagtttgttttgtatgttttttaaattcgGGGGTCAAACAATTGGCCATGCAAGGTTTTTATtccaggaaaacacatttttcaagatatacaaaatcaaatgcattttaaaatgggtttCCAATTACATAGtcaatttcttaaaacaaaaacagtcaagTCCAAGCAATGCAGAtcaagtccattttaactcaATAAATCAGCCTTCCCAATTGACACAGTAATCCCAATTCACAGAAAGGAGGCGCCATCTTGATGACATACCAGTTGTCTCCACTTGAACCTCTTCAGTATGGGGTCTTaatggaattaaacaaaaaaaaaaaaatatgtaaacagCCAATATAATTTGGCATTAAGAGCAGGCAATATATTCAAAACCCTTACCTTAGAAGTcttcacattttaaagtttaatgaaaaacaaacaacctcaAAATAAGCATAAATCAGCATAAAGCCCAAAGGCTACAAAATGAAACATCTAAACACTATGCATGCAACTACTATTCTGTCAAGTAGTCTTCAAAAGtctataaaatgtatgaataagaTAACTGTTCTAAATCTTACTTATGCATTAATTAACTAAAGTAAATATGCCAGTGAACATCACAATGTTACAAAACAGTGGGATTTAATTTACCACTGTGGAGTCCACTcaaatatgaattttaaaaaccCTTTATAAATTTGTTAAACCAGCTCATAACAAAATAGTCTGAAGTGTTATGATAACCTACTGCAAATTTCCTTCAATATCTGCATACTACTTCATCAGGAACATTCTAAACTGtcaataaaatcaaaacctttACTTCAAATCTTTGAACATTTCTCAACAACTAATGTAAAAAATTACTTTACATTCTAGATGAATAATTTGAATCTTGAAAAGTACACACATCTGAAAACTGCAAATCTAACCAGGctcacaaaatcacaaaacaaaatcactgctctataaaatgttacagtattcTAACCAACAAAATCAACTCAAAAGCAAACTGTCCCCATTATTAAATCTAGCTATACAGTCTACATCTACTCATGGTCATTATCCAGACATTGTCTTAATGTGAACAGATGCACTTTAATTGTAATGGGGaaagcaaaaatgtaaacattatcCTCAAGTACCTCAAGATAACTCAAGATAAATCTCAAGTTTGACCTATGTAGTTGATAAAATAATGCTCTCTTGAAGAACGGTACATTACACcaacattcaatttaaaatcagatAGACAAATAtatcatacaaataaaaggcaaatCAAGTCCCACCAATTTATAAAGACTGAGAAAAtgccaaaaacaaacagcaactcACAACATATGTAAGCCCACTTTAAAACACCATACACTTACAACACAACAGTTCAGTTTAAAATTCACTCAGTTCAGAAGGTTGTCATTTACATCGTTCAGTGTCTTTGCTAAAATCACTGTTGTTGCAGGTCTAAAGTTTACATTGTTTCACGTGAGATTAAAACTAATCTTTCAGACCATGAAAACTCAGATTAGAGTAGCCTACTATTTTTGCAAAATTGATAGTGTTTTCACAATGCAGGATCTCTTGCAAGTGTTTTAATCAATTGTAATGTTGCAGCAAAATTTctcatttcaatatttcaaccAATAAGGTTGACTACACTTTTCCTCAATGGAAATTTGATTaatcatacatacatgaaaTCACCAAGCTCATGCACTTCAGTCTCAGATAGGAGATGCTATTAAAGTTCACACAGTAATGAACCATCTTAAAATAACAGATTGAATATCCAATTCCACTAGGGACATTTGTATAGAACTAGGACCCTAAAGCCCAAGTGATGGCAGGAGTGGGATGTCTGCAGTATGAAGTGAATTGAACTAGGAATGGAAAAATATCTTGAATTGCACTGCAGTTGATGGGAGTCCTAAACTGAACAATGAAACCACAAGTGCAATGTACACTAAGAAGTTTGACTTGAGAAGCTAAACTAAACTTGGTTGGCACAGTCAACTCAAAGAGGCAGAAGACTGTTGGGTATTGAGATTGTATCTGGTTAAGAACTCAACAGCAATACACTGCTATACCAACCTGCCATGCTCTCTCTATAGAGGATCAAActccattaattaaattatagtaaTGTCTAATTGACATAGTTTTCAAACAACTATGTTTTGTTGAGTGTCATGTGTTAACTTGGGAATTTAAATGCCAAGGATTTCCACATTCTGAAAGGTAACTGGTATACCGAAAAAGTGGTACACAAGTGTGGTTATACATGGTGTAAACTTGGATTACGACACCAATAAAATCTGCTTTAATATGGGATCTCAGTTGTGAGATGTGTTACACAAgcaaattttaaatgaatgtgaccTAATTGAGAAGACCTTTCTATACACAGCTTCATGGTGCTGGTATATGGTCAAGATGCTTGATCCATCAAGCTCCTACAGACAAACACATGCAACAATGTCTGAAAGGGGCTTGGGTTGAGTAAAGTAGAACACCTTCGATACAAAACCAGCCTTCTTCATGAGCTTGTCCAGACTTGATTATACGGAGATCCAGGCTAATGGGGCTATATGGAAACTTTGTGGTTGATGTTGCAAAACAGATGTGGTGTAGGATCTGTCAGAGTCCAGGCTGGTACATTGGAAAGAACTGACTATTCTTTCCTCTGGAGCAACACCTTCACGAGTGTTTTGTCACAAGACAAGATTCTTCAAAAGTTTGAGAAACTATATTGGTGCCGTCAACCCAACCTTCATTTAGGTTGAAAACATTGTTTGCATCTTATCTTGAACAGGAAGGCTTTGGAAGTGCTCTTGACAAACCTGATTGACTATGCAAGACATAATGCAGAAGGTGGCAGTGTCCCAACCGGTCAaagatttttgtagattttatATGCCTACTTTCTACTAGCAAAGAACCGGCCTAGCAATCTCAACATGCCTGCCATCAGCAGACAGGCCTAAAAGGCTCATTGCACACTATCAGATATGTAACACTGATTTCATGCAAAGAATAAGGAAGtggctttcaaaaatacatgtgAAGGGTGTGGTATATTCCCCCATTTTAATCAAGTTATTTTGGAATGCATGTGTTCAAAGGCTAAATGTATAGCAAGAATCTGTTGTCCAGAAAATTActataaaatgtgaaacataTCCTCATCTTTTGAAGTGTATGGGCTTGGTGACTTTATTCAGGTGAAATGACAAACATCTGAAGAAAAATTCCATATACATAAACACCATTACAACAAAACTCAAAGTAAGACTTACCAGGGTGTCTTGAAAATCACTGGTTTTCAGAAGCATCTTGGTAGGGTAATACTTCAGAGATGTCCAATTCTGAGTCtttttctcttttgttaaCTGCACTCCCTCGGAGGACGACCTCTCAACTGTGCaaacatcttcaaaataaatgctaagCACTTTCTCTTCTATTCATCCATCTCCAGTTTGTCCAAGTTCAacCCTAACTCGGCTGAAAtattttctccttctcctccctgtGCTCTGTGGCGATTATTTCCGCGCTGCTCCTACTCTTTTTCTCGATTTTTTTGTCCCTGCCAGATCTTCGCTGCCCTGCCATTTTGTGCTGTGGGTGTGAGCTCGTCTGCTGCGTCCGTCCTCCTCCCGCTCCTGCTCGCTGTGTTGTTCTCCCGACACGGGCTGCCCTTCTCTCTCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33836 True 3788 lncRNA 0.36 4 35595413 35603182

Neighbor

gene id symbol gene type direction distance location
AMCG00007872 LOC106561144,LOC106573775 coding upstream 46506 35537561 ~ 35548907 (+)
AMCG00007871 NA coding upstream 271523 35320619 ~ 35323890 (+)
AMCG00007870 NA coding upstream 366689 35222464 ~ 35228724 (+)
AMCG00007867 NA coding upstream 1241779 34348487 ~ 34353634 (+)
AMCG00007868 NA coding upstream 1269997 34271763 ~ 34325416 (+)
AMCG00007878 si:dkeyp-59c12.1,LOC106561194,LOC108431221,LOC107690407,LOC107549016,LOC107715600,LOC107693031 coding downstream 208544 35811726 ~ 35815067 (+)
AMCG00007881 NA coding downstream 257449 35860631 ~ 35931488 (+)
AMCG00007884 NA coding downstream 414505 36017687 ~ 36019684 (+)
AMCG00007888 NA coding downstream 681801 36284983 ~ 36294189 (+)
AMCG00007892 NA coding downstream 801486 36404668 ~ 36425781 (+)
G26998 NA non-coding upstream 35854 35556145 ~ 35559559 (+)
G26993 NA non-coding upstream 42910 35550842 ~ 35552503 (+)
G26978 NA non-coding upstream 305168 35290036 ~ 35290245 (+)
G26960 LOC101154678 non-coding upstream 725691 34869444 ~ 34869722 (+)
G26951 NA non-coding upstream 780024 34815160 ~ 34815389 (+)
G27025 NA non-coding downstream 5241 35608423 ~ 35608637 (+)
G27052 NA non-coding downstream 204186 35807368 ~ 35842842 (+)
G27079 NA non-coding downstream 299862 35903044 ~ 35903259 (+)
G27089 NA non-coding downstream 384119 35987301 ~ 36000934 (+)
G27108 NA non-coding downstream 426276 36029458 ~ 36030333 (+)
AMCG00007854 NA other upstream 1800472 33763513 ~ 33794941 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 4155035 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 5775861 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 5870679 29622311 ~ 29724734 (+)
AMCG00007769 acsbg1 other upstream 6589034 29003095 ~ 29006379 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 7800 35610982 ~ 35620801 (+)
AMCG00007889 NA other downstream 693036 36296218 ~ 36302841 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 1600688 37203870 ~ 37216558 (+)
G27518 NA other downstream 2541802 38144984 ~ 38146850 (+)
AMCG00007952 romo1,LOC102788570 other downstream 2565388 38168570 ~ 38170146 (+)

Expression


Co-expression Network