XLOC_006021


Basic Information

Item Value
gene id XLOC_006021
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 27785094 ~ 27805880 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011886
atctaAGGTTGTCTTTTACACAAAATTTAAATGAACTCATGTGAATCTTCTTATTTGcgttaaaagtaaaagaaaaaaacaacactatGAGAACTGAAGAGCACGGTGACAGCGGTCAAGGGGTCATTTGGTGAATGTAAAAGCTGGCACCATCATGGATGCGAGCGCTTCGCCTGCTGATTGGTCAACATACGACATCGATGACACAAAAGTGGGCGGGCCGAAGCTCAGGAATCCACATAGAAAAAGTCAGGAGTGACAGATTGGCTGGAGTGGGTGACAGAAGTGCGGTCGGTCGAAGAAGTCAAGCAACCCCATTCTTAGTTGCCATCTAACAAAGTTGTTTTATAGACTTCACACGCCGTGTCTACGCGTGCAAAAGAGCCAGGAGACGCAAGGCTACAAAACTTCAACAAAAACCATCAGAAAATTAGTTGATTATAACGGTCGCTATCTATCTCTGTCTCGTCGCGTGCGATAATTACGTAATTACACACTTGTGGCGATTCCCAACCGCATTTACAAGTACTTTAGGCTCGACTGCTTTGATTAAGAACTTTAAATCACGTGTAAGCAAGGCTTAGTGAAGTTGAAGACATGACAGAATCAGTGAGAATACGAAGATCACGGCGACGATCAGCCTTTATggacatttatacatttttgcataaaGCATCTGTACTGTCAGCGCTGGAGGAAAAGTCACGAGCATCTGAGAAGAAACTTGTTCGTATTTTTCAGGATCCTCTACTGAAATGCGGATGTTCTGAGTGTGGCTGGCACCAAGTCTGATGACTTTTCCCAGAAGATTCAGAGAAGAGGGGCAGAAAAAGAGTCTTCTTGTCCAATGAGAGGAAAAGGGGACTGAAGAATGTGAAAGCTCTCATTCAGGCCGGTTCACAGGGGCCGGGAGCGGCCACATCCTTGGGAGGAGGGGTGAGCCGGGGGTCCTGGATCAGAGCCAGGAGCCATGAAGAGGCTCCTCGGATGACGCTGGTCCGTGGGAGCAGTCGGTGCCTCCGCCTCTCCTCTGTCCCTCAGGACATCGACTCCGGACCCCTCGCATTCAatttactcacacaaacaaacTCTCCCCGCAGTCCTTGTACCCACTGAGCAGAACCAGCCGGTGAGCTGCAGGGTGAGGAATGTGTCTCTATTAATAGAGCGGGTAGATTATCTCAAACACTAATGACTGGCATGTCCAGATTCCTGAAAGGCACGGCAGTGACGTACTCTCATCCAACAACTTTGGCAACAAAATTGGCAATGAGCTCATTTCCCCAGATTATCTATGAATTTACCTTACAGTACTCTTTTTATAATAGCTTCTACTTTGTGCTTTCACAGCCATACTGTTAAATAGAAATACAACCTTTAGGTTTAATCATTtagattatgtttttatttaaatcaagAGACAAGtaagaaaaattaattaaaaatagaatACTTATTCATAATTATAATGAATTAATTGGCCAAAAGTGTTAGTATATATTTATGATTAAGTTAGGATATGcagtattttgaaaaacataGGTTGATATTATTGAGCTACGTCATACCCtaaaaatacagtgctcagcataattgagtacaccccattttgaaaataaatatatttctcaatttctcagtgaatataggcaatgtattttggttcaataaaacaaatttattaaacagatatttattaaaataatattttagtcaccaaacatatttagaaattaaaagataatacaattaaattcaagctaaatattgcagaaataatttacaacctacaaaatttcttttttttttttttttttggcttttcttgattttaacttttttttaaatttgtattaaatatttttctataacataaatttgggtgtactagtttttggaccattatcgtgagtaattttgttagataagctccagatttggcattagtactgacaaatctaatgtatatgcacaaatataatattgtacagcttcctattaaaaattagaatttaaaagatagatttgtgaggggtgttcttacatatttgctgagcactgtatatgaacaacattgttgttgttgttttgttttgttttttgctttcatGACCTGTATCATAGGCagtttgtgattttaaaaaaatgtgtttgaactTGCATTGATCGAAACGTGATATTCAGGTATGTTTGGGTCAAGAAATTCTTTCCTATCAACCCATGGCCAGATCTTTCCATCCCAGCTCGACTTGGGAACCCATATGAGCTTCAGGGAGTGTAAACATCCTACACTCTCAGCTGGAGCGCAGCCGAGGCCGGGAGTGGGATGTTTGCGCTCTCTGGCTCAGGAACGCCCCTGTTCACTGTAACAGAGCTCCTCCAGATCATCTCTTCTTTACAGCAAATCTGAAATTGCACCTGTTCACCGTACTGGAGTAAGTAGCAATCCTGTGAGTTTAGTATACTTATaaaaatctatccatctatttagtgtcaatctatctatctgtctgtccttcCAACCAtccgtatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatatatatatacatatatatatatatctgtctgtctatctgactATCAATACCTTATATGaggtaaatttaatttaatgtgaaaTTGACACATCTTTTTATTGATGTCTTTCTTTTGAGTCGTGAGATGTAGcctattaaatataaatgtttattttgttctgtAACCAGTCGTAAACAGAGAAAGGAATGATCACATTAACTCATCTTCGTCTGAAGTGATCTGTCACATCAAAACAGCTTTAACAGAATTTGTTTCCTAATAAAAAGTAACTTTACACAAAGCGTCTTGTGATCATTggactgtatgtatgtgtatctAGGAATTTAAGaatcaatataatttattaaaatgatgatttatAGATTTACAAGTTTCAGATTAATTTTTGCAGATATAGTGGGTAAAGTAACACCGTATTTCTTctgaacatatacagttgaagtcagaattattagcccccctgaattattagcccccctgtttattttttcctccaatttctgtttaacgaagagaagattatttcaacacatttctaaacataacagttttaataactcatttctaataactgatttattttatctttgtcatgatgaaagtaaataatatttgactagatatttttcaagacattattatacagcttaaagtgacatttaaaggcttaactaggttagtttgtttaactaggcaggttagggttattgtataacaatagtttgttctaaAGACagtcaaaaaatagcttaaaggggcttataattttgaccttaaaatggttcataaaaaatctaaaactgctttttttcaagccaaaataaaacaaataagactttctccaaaagaaaaaatattatcagacatactgtgaaaatttccatgctctgttaacatcatttgggaaatatttaaaaaagaaaaataaatcaaagggggactaatgaTGGTGGCTAAATGACTTTTGTACAGTAATGTCTATACATATATagataaattgtatttttgtctcATTAGTAGgctaaaaaaacagaaacaatggaaaatatttacacaaaaaataaaaaaattgtaaaaaatcataaaatgacTCCTTCAAGACAAGAAAAAGTATATGTGACCTCCCCAAACACTGCTTATACTAACACTAACACTATTACACTGCTTATCTAACACAACACatctatatagtttatatatatatatatatatatatatatatagagagagagagagagagagagagagagagaaagagagagagagagagagagagagagagagagagagacaaagagagacagagaaagtcACAAAGAATAAGAAGACTAATAAAAACATCAGTGATGcatatgcaaacacacacgcacacacacacttagattATTATAAATGATCATTGTAATTAccctgattattatttttttatgtttctgttttattctaaaatgttaa
>TCONS_00011888
CTTCAGGGAGTGTAAACATCCTACACTCTCAGCTGGAGCGCAGCCGAGGCCGGGAGTGGGATGTTTGCGCTCTCTGGCT

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0017144 drug metabolic process biological_process
GO:0048863 stem cell differentiation biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0071711 basement membrane organization biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0061564 axon development biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000080952

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011886 False 4080 lncRNA 0.35 2 27785094 27805880
TCONS_00011888 True 79 miRNA 0.59 1 27804067 27804145

Neighbor

gene id symbol gene type direction distance location
XLOC_006020 asrgl1 coding upstream 2330 27768898 ~ 27782764 (+)
XLOC_006019 CR354610.2 coding upstream 393157 27363949 ~ 27391937 (+)
XLOC_006018 cgas coding upstream 452734 27328098 ~ 27332360 (+)
XLOC_006017 eef1a1a coding upstream 459209 27314795 ~ 27325885 (+)
XLOC_006016 slc17a5 coding upstream 471538 27298673 ~ 27313556 (+)
XLOC_006023 b3gat2 coding downstream 145808 27951688 ~ 28009574 (+)
XLOC_006024 NA coding downstream 458356 28264236 ~ 28282323 (+)
XLOC_006025 CR762431.1 coding downstream 601033 28406913 ~ 28414559 (+)
XLOC_006026 slc2a15a coding downstream 611417 28417297 ~ 28442086 (+)
XLOC_006027 NA coding downstream 669721 28475601 ~ 28483406 (+)
XLOC_006014 BX323884.1 non-coding upstream 552521 27216641 ~ 27232573 (+)
XLOC_006011 NA non-coding upstream 975775 26802494 ~ 26809319 (+)
XLOC_006009 NA non-coding upstream 1719830 26056457 ~ 26065264 (+)
XLOC_006008 NA non-coding upstream 1801729 25965727 ~ 25983365 (+)
XLOC_006030 NA non-coding downstream 759299 28565179 ~ 28567486 (+)
XLOC_006037 CU640488.1 non-coding downstream 934355 28740235 ~ 28740369 (+)

Expression


Co-expression Network