G27154


Basic Information

Item Value
gene id G27154
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36329420 ~ 36390820 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU33999
TCTTAAGATATATTAGGTATTTATAGTTGTGAGaagttgtttatattttataagtaatCTAGATAGTATAGTTAAGAAGTGCGAGCAAAGAAGTGCTCATTTGCAGAGCACTTGAGtccatttgttgttgtttcttgacTTTTGGTAGAAAGCTTTATTAATGCACGACAATCTCCAGATATAAAAGACTGAGTTTGTTTGCTGTGAATTCTGTCCAAGATCCAATGCaccaagcatttttttttgtggtataCAGAAGCAGATGGGGCAGATGAAGGCAGACATGCAGCTCCAAATTgaggacagacagaaagacgTGAAGGAGCTGAAACAAGCTAGAGAGTCTCTTCTGGAGCTGTGTCCTTCTCCGATTCTGACCATGGCTGAAATAAAACTGGAACTCATTTCTGAGACTCTGCTAAAGGACCCAGACACTCTCGCCTGTGGGCACAGCTTCTGCATTGGCTTGGAAACAAGAAGTTAAGTTCGAAGTTCGAAGTGCAGAGTTGAGAATGCGagtgaaaaacaataaagtcACCTTAAACATG

Function

GO:

id name namespace
GO:0006412 translation biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU33999 True 548 lncRNA 0.40 2 36329420 36390820

Neighbor

gene id symbol gene type direction distance location
AMCG00007888 NA coding upstream 35231 36284983 ~ 36294189 (+)
AMCG00007884 NA coding upstream 309736 36017687 ~ 36019684 (+)
AMCG00007881 NA coding upstream 397932 35860631 ~ 35931488 (+)
AMCG00007878 si:dkeyp-59c12.1,LOC106561194,LOC108431221,LOC107690407,LOC107549016,LOC107715600,LOC107693031 coding upstream 514353 35811726 ~ 35815067 (+)
AMCG00007872 LOC106561144,LOC106573775 coding upstream 780513 35537561 ~ 35548907 (+)
AMCG00007892 NA coding downstream 13848 36404668 ~ 36425781 (+)
AMCG00007896 NA coding downstream 94166 36484986 ~ 36489446 (+)
AMCG00007895 NA coding downstream 136545 36527365 ~ 36534128 (+)
AMCG00007894 LOC106562351,LOC107554933 coding downstream 149763 36540583 ~ 36569423 (+)
AMCG00007897 csk,LOC107089925,LOC108264088,LOC103138042 coding downstream 232233 36623053 ~ 36644439 (+)
G27139 NA non-coding upstream 22543 36305974 ~ 36306877 (+)
G27111 NA non-coding upstream 146698 36102296 ~ 36182722 (+)
G27108 NA non-coding upstream 299087 36029458 ~ 36030333 (+)
G27089 NA non-coding upstream 328486 35987301 ~ 36000934 (+)
G27079 NA non-coding upstream 426161 35903044 ~ 35903259 (+)
G27187 NA non-coding downstream 38586 36429406 ~ 36429931 (+)
G27216 NA non-coding downstream 294490 36685310 ~ 36727117 (+)
G27253 NA non-coding downstream 376833 36767653 ~ 36767939 (+)
G27263 NA non-coding downstream 453161 36843981 ~ 36845524 (+)
G27300 NA non-coding downstream 565362 36956182 ~ 36956454 (+)
AMCG00007889 NA other upstream 26579 36296218 ~ 36302841 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other upstream 708619 35610982 ~ 35620801 (+)
AMCG00007854 NA other upstream 2534479 33763513 ~ 33794941 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 4889042 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 6509868 29755040 ~ 29819552 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 813050 37203870 ~ 37216558 (+)
G27518 NA other downstream 1754164 38144984 ~ 38146850 (+)
AMCG00007952 romo1,LOC102788570 other downstream 1777750 38168570 ~ 38170146 (+)
AMCG00007957 raly other downstream 1965109 38355929 ~ 38423155 (+)
G27551 NA other downstream 2041225 38432045 ~ 38436595 (+)

Expression


Co-expression Network