G27173


Basic Information

Item Value
gene id G27173
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36362471 ~ 36364455 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU34020
CCTTGATCATCTTTATTCAGCAATGTGgctcaaaaacaacaacaatcaagaacaatattaaacacacaccattttattttgtattttttgtacacATCCAGTCAATACATCTATACCATTCTAAACATGTTAATTCATAACCTTCTTTAAATTTATTGAAAACCATTACTAGATGAAATCAATAGATTAGATAcataatatagatagatacatatatagacACCTAGACAGAttataaatggatacaaaataatagtCAACTGCAATATCATACATACCACAACCCCTCTcacatattttcacaataattaaatgaatcccTTATATCCAGTCAATGTACATAACGGTATTATAAATCTAAattatgcatgtttatttgttttttgattcaCAACGATGCATCAGCTTCTCCTCATTGCTTAATTCCTGCCTAATAGCCCTCTTCACCTCGGCTTCTGGGCAACTCATCTTCTTTGTGACATAtgctaaaaaatacattgaatgtttaaaattgaGAACAGTGGTAAAAGTAAGACAATACTCTCtctttctgatttatttagaaattatatatacatatataaccaTTCAGTTAGAAGAAGCAATTGGGACAAACAAATAAGCACAGTTGTAAAATTGGTTGGGCGAAGGTTGCCCCAATTGTTTCTTCAAACTtgtctattttaatttcaaacatttattttaaaacttctaTATTGCAGTGTCCCCTTGTTCTGTTTCCAATATGTTTTCGTATGggctcaaaatgtattttttcagaactACATATTCCATCATCCTCCTGCATGTGAGTCCATACGAAGACCTCTTGCAAGATTTTCCAGTAATGACAGGGTGATGAATATGATGAAGTtaaagaaagtttaacatgtgatTTATGCAATAATTATGGTAATTGTTTAGTGTATTTGACAACAAGGTGTATGTATTGGAGGGTGGGGGTaaaggaataaacaaaatagataCTTATTAGAAAAATGATCTGAAACTCCCAAATAATGGTATTAACGACCTCTTCATTGAGTTTTTCTTTCTGGGGTTTGTTGTCTTTGGCGGTATGGCTGGATGCTCCTGTTAGTGAACAGCTTTCCAGAACCTCCCGGGGAACCAGAGATTATTGGTTGTTTTGTGGCAGCATCTTTGTAATTTTGCGGTTTGTATAGTAATGCCAGGTGAAAGCTGTGTCATTTCCATTAGAGCAATTGAGTTTGTCAGCCTTGCTACTTTGATTTGTagttcacatttttttctttttcaggtgtACATTTTCAAGTTTCAGGATGTGAAGTTTATTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34020 True 1317 lncRNA 0.33 2 36362471 36364455

Neighbor

gene id symbol gene type direction distance location
AMCG00007890 LOC108439026 coding downstream 48328 36307564 ~ 36314143 (-)
AMCG00007891 NA coding downstream 56099 36304406 ~ 36306372 (-)
AMCG00007887 NA coding downstream 94665 36179909 ~ 36267806 (-)
AMCG00007885 NA coding downstream 219828 36122270 ~ 36142643 (-)
AMCG00007886 NA coding downstream 301818 36038446 ~ 36060653 (-)
AMCG00007893 NA coding upstream 66692 36431147 ~ 36465435 (-)
AMCG00007901 LOC107712968 coding upstream 365866 36730321 ~ 36743469 (-)
AMCG00007908 NA coding upstream 505676 36870131 ~ 36879680 (-)
AMCG00007911 LOC103464266,LOC105008435,LOC107595422,LOC107087943,LOC107666149,LOC108272058 coding upstream 520925 36885380 ~ 36900670 (-)
AMCG00007910 gdf5 coding upstream 572372 36936827 ~ 36941868 (-)
G27123 NA non-coding downstream 213195 36102306 ~ 36149276 (-)
G27109 NA non-coding downstream 332159 36029469 ~ 36030312 (-)
G27107 NA non-coding downstream 335488 36026723 ~ 36026983 (-)
G27023 NA non-coding downstream 759296 35595430 ~ 35603175 (-)
G26997 NA non-coding downstream 809964 35550871 ~ 35552507 (-)
G27196 NA non-coding upstream 103631 36468086 ~ 36468452 (-)
G27197 NA non-coding upstream 126741 36491196 ~ 36491846 (-)
G27243 NA non-coding upstream 379613 36744068 ~ 36745866 (-)
G27252 NA non-coding upstream 395890 36760345 ~ 36760589 (-)
G27254 NA non-coding upstream 403198 36767653 ~ 36767939 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other downstream 351476 36003193 ~ 36010995 (-)
G26961 LOC101154678 other downstream 1492664 34869435 ~ 34869807 (-)
AMCG00007835 LOC107594750 other downstream 4546320 31804899 ~ 31816151 (-)
AMCG00007822 NA other downstream 5019679 31338716 ~ 31342792 (-)
AMCG00007817 NA other downstream 5115822 31192010 ~ 31246649 (-)
AMCG00007907 NA other upstream 478020 36842475 ~ 36846583 (-)
AMCG00007929 NA other upstream 875629 37240084 ~ 37242983 (-)
G27416 blcap,bc10 other upstream 1130456 37494911 ~ 37499392 (-)
G27437 NA other upstream 1203162 37567617 ~ 37569284 (-)
G27439 NA other upstream 1206502 37570957 ~ 37571488 (-)

Expression


Co-expression Network