G27253


Basic Information

Item Value
gene id G27253
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36767653 ~ 36767939 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU34107
ttttttaatgtagacaTATGGCAGGACTGCACAATTGTGAACAAGTAGTAATTGTACTGCACATgtctggggaaaacaaaagtattattCAATCGGTGGCTTCTTGTCTCCCACTTTTGATAGTTGTTGTAACATATGTCTTTTAGAAAAACAATGATTTGCCTGTATGCTTTTTGTACTTTTACCAGTgagtgtaaatatttgttatattttgtttaagagAATGTTTAAAAATTACTGTTTATTCCTCCCAAGTCTactgatgacaataataaattCAGTAAATT

Function

NR:

description
Cerebellin-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34107 True 287 lncRNA 0.31 1 36767653 36767939

Neighbor

gene id symbol gene type direction distance location
AMCG00007900 tarsl2,LOC106587557 coding upstream 11825 36743984 ~ 36755828 (+)
AMCG00007902 NA coding upstream 49138 36717754 ~ 36718515 (+)
AMCG00007899 LOC106587555,LOC106562349 coding upstream 56266 36700805 ~ 36711387 (+)
AMCG00007898 csk,LOC107089925,LOC106573028 coding upstream 121144 36644909 ~ 36646509 (+)
AMCG00007897 csk,LOC107089925,LOC108264088,LOC103138042 coding upstream 123214 36623053 ~ 36644439 (+)
AMCG00007905 NA coding downstream 3673 36771612 ~ 36791738 (+)
AMCG00007903 mmp24,LOC107723920,LOC107666082,LOC107587563,LOC107696473 coding downstream 47711 36815650 ~ 36841835 (+)
AMCG00007906 eif6,if6,LOC107723919 coding downstream 79615 36847554 ~ 36855323 (+)
AMCG00007904 NA coding downstream 87689 36855628 ~ 36865482 (+)
AMCG00007912 NA coding downstream 161114 36929053 ~ 36939598 (+)
G27216 NA non-coding upstream 40536 36685310 ~ 36727117 (+)
G27187 NA non-coding upstream 337722 36429406 ~ 36429931 (+)
G27154 NA non-coding upstream 376833 36329420 ~ 36390820 (+)
G27139 NA non-coding upstream 460776 36305974 ~ 36306877 (+)
G27111 NA non-coding upstream 584931 36102296 ~ 36182722 (+)
G27263 NA non-coding downstream 76042 36843981 ~ 36845524 (+)
G27300 NA non-coding downstream 188243 36956182 ~ 36956454 (+)
G27334 NA non-coding downstream 324710 37092649 ~ 37093330 (+)
G27400 blcap,bc10 non-coding downstream 727220 37495159 ~ 37499385 (+)
G27462 NA non-coding downstream 1009126 37777065 ~ 37777462 (+)
AMCG00007889 NA other upstream 464812 36296218 ~ 36302841 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other upstream 1146852 35610982 ~ 35620801 (+)
AMCG00007854 NA other upstream 2972712 33763513 ~ 33794941 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 5327275 31414154 ~ 31440378 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 6948101 29755040 ~ 29819552 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 435931 37203870 ~ 37216558 (+)
G27518 NA other downstream 1377045 38144984 ~ 38146850 (+)
AMCG00007952 romo1,LOC102788570 other downstream 1400631 38168570 ~ 38170146 (+)
AMCG00007957 raly other downstream 1587990 38355929 ~ 38423155 (+)
G27551 NA other downstream 1664106 38432045 ~ 38436595 (+)

Expression


Co-expression Network