G27302


Basic Information

Item Value
gene id G27302
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 36967127 ~ 36969756 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU34168
TTTCgagtatagttttttttaccttttttaattaattcagtaacAGGACAATATAAATTCAGTATGTACAGAACTGTCAATGGTCAGAAAAGCCAAACCACTCAGCAAAtcagcataaaaaaataataatcctccTCATGTCTCAGGACTGCagaacagaagtatttacaacaACAGGGGGTTTAAGAGTTAAACCGCACGTTCTGTTGGAGCAAAACGCACAGCTGTATTGACATTTTCAAACTAAACATAAAAGgacagaataaacaaaataaccttGCCACTCACTGACTTAGTGTGGTTTATAGAGCCCCTCTTTAGATAATTTAAAGACTGTGAAGACTTGTCTGTTGTACGAGAGGAAAGATAATCCCCATATCACCAAAACGTCTCTGGATTAGGACTGTTGAAATGGACGGGCCAGCTGTGCAGATATGGCCCAGCTTGTagctccacacaaaaaaagctgATATTTTCAGCACCTGCCTGCAGTCTTCAGCTACACCAATGGGAACCCCGGACAGCAGCAAGTTTGCGAAGCTGGCAGTGCGAGATGCACCCTTCGTTAAAAGGGCAGCACAATCCTCAAACCCCTCTTGCCATAATCTCCATATCCAGTGCCATTAAGAGTTCAGGGCCACGCATAGTTAGCAGCTTCCTGAACATAGCACTGTAGTGACAGGATGTGGGTGTTGAATACAGAGGAAGTGTTCAGTACCACTGTAGAGGAATGTAGAGCAGGTTCCCAAGGGACACTCTGCTTCCCAAATCAGTAAAGGTTTTTAAATCACCAGGTTTGGTTTGATGGCAAGGATTGTTACAGGTGAATTTGATATAGAATCTTATGCATCCTAAAAACAAATTTGGCGAGGGAAGATGGGAGGGGACAGGAGGATGGTTAAGATTCTTTTGTATATTAGGTTCAGTAAATTTAACCTTTTTAGGTCAAAGCAATTGGAAAATGTTATCCTCCCCACACCAAATAGGAAAGTTGGGATAAACAGTAAGCCGTTTTGCTTGGCACCGACATTGCGTCTCGCGACAGTGGCTGCAGTGTACCGTTCAGGATTTGATCAGAGTGCGGTCGCAGCCACCGCCGTGAAGAACGCCGCTGGTAAGGAAGACAGACCTTAAATTCTATAGCTTATCAACTGCAATTTCattaagggaaaacaaaactgaataaatataaatcacaagATCAAAACGCAACGCTGAGCTTGTGCTGCAAGAGCTTCACAAAATCGAAAACAGCAGCTTCTGTACGGAAAGGGTTAACCAGAttgaacagattttttttttttttttttttctccccaaagTAACCAAATCCTGAATATTGAAATTGAGGATTCTCTAACTTCACCATAGCAGGAAAGTGATTAGACACCTTTTCCTCGTGGCAAAGAGCAGCAGACTGTTGCCTGTGTGAGTCACACGGCTGATTTCAGAAGTAGCCCCGaagtttaatagttttattccttctacaaaatataaatatatactgcttACAATGTCTAACAGAAATATAGAAACTCTTACAATATAAAACCTGTtataaaactaatttgttttatgaaaattaaaaatctcaAACTACAGGATATAAAATTTAACACATATACAACAGTTTAGAAAGGGAAAAAGTCCCAACCTgaaaaaaaggcaataaaatatttgagttaaattaataataattaaaaacaaaaatctggaAATTTCTACAAACccagttaaacaaaacaataagaaaCTTTTTACTGGCAACTAGCATTTGTAGTAAAATACAATGAAGGGGATCTCCCTTCATGTACAGAGTTTTAGAGGAATTCAgtttgaaaactgaaacaaaccaatgttaaaagcataattttggcatttaaatatttggtaAGAGTGAGCGAGGGGAGCGCTTTAGAGTAACTGGAATGGGGTTGATTTAAAGGGAGCGTTCACCTACACCTGAAGGCATGTACCATTGAACAGGGGTGGCAATGCTAGGCCTTCGGTAGCACCAAGACTGAAGCCTGCAATCACATTTGTACTGCACTGCGTGGGGGAGTGAGTGCCAGCGTTTGGTCTACGAATCAGTACCGTATTTCTCCTCCAGCAAGATTGGATTGCATCATGTAGTGTCGAGAGCGAGTTAGCGTAGGGGACACAGCAAGGGGGGGGGCACAGTGGCAATGCTCCACACCCTCCGGCGATGCACAGCGGGAACAACCACCCTGGATTTGGCAACTCAATCAGTCCAGTGGAGGTCGTCGCATGAACAAACTTTTAGGTCACTTTagtttcacaaaaaaataaaaaataaaaactccaaaGTGTTTTGTTCCAGTCTCTTTTTCCTGGATGTGAAATGCAGGCTGACTGACAAATGTTGCTTAGGCATGGAAGTAGCAGAGTTTTTGGTTTCAGAGGCACCATTGAAAGTCTGCGGGGCCCTATGCGTAGATCTCTGTGGTAGGCGCCTTCTTGTAGATGGGCTTCTTGCCCAGGTCATAGCTGCCTTCGTCCTTCTTCTTCATGCGATAGATGAGCAGCAGGATGAGCAGGATGGCAAACAGCAGACCCACCGCTCCTCCGGCGAtcagag

Function

GO:

id name namespace
GO:0019222 regulation of metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0065009 regulation of molecular function biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0030162 regulation of proteolysis biological_process
GO:0051246 regulation of protein metabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0052547 regulation of peptidase activity biological_process
GO:0051336 regulation of hydrolase activity biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34168 True 2599 lncRNA 0.42 2 36967127 36969756

Neighbor

gene id symbol gene type direction distance location
AMCG00007910 gdf5 coding downstream 25259 36936827 ~ 36941868 (-)
AMCG00007911 LOC103464266,LOC105008435,LOC107595422,LOC107087943,LOC107666149,LOC108272058 coding downstream 66457 36885380 ~ 36900670 (-)
AMCG00007908 NA coding downstream 87447 36870131 ~ 36879680 (-)
AMCG00007901 LOC107712968 coding downstream 223658 36730321 ~ 36743469 (-)
AMCG00007893 NA coding downstream 501692 36431147 ~ 36465435 (-)
AMCG00007915 NA coding upstream 18907 36988663 ~ 36992974 (-)
AMCG00007916 NA coding upstream 43548 37013304 ~ 37023811 (-)
AMCG00007920 NA coding upstream 168471 37138227 ~ 37141287 (-)
AMCG00007926 stk4,LOC103371188,LOC108435692 coding upstream 248014 37217770 ~ 37238928 (-)
AMCG00007928 LOC105008385,LOC108414618,LOC106566651,LOC107702880 coding upstream 278623 37248379 ~ 37259255 (-)
G27254 NA non-coding downstream 199188 36767653 ~ 36767939 (-)
G27252 NA non-coding downstream 206538 36760345 ~ 36760589 (-)
G27243 NA non-coding downstream 221261 36744068 ~ 36745866 (-)
G27197 NA non-coding downstream 475281 36491196 ~ 36491846 (-)
G27196 NA non-coding downstream 498675 36468086 ~ 36468452 (-)
G27335 NA non-coding upstream 122893 37092649 ~ 37093300 (-)
G27435 NA non-coding upstream 597013 37566769 ~ 37566983 (-)
G27436 LOC107666014 non-coding upstream 597447 37567203 ~ 37567566 (-)
G27438 NA non-coding upstream 600503 37570259 ~ 37570881 (-)
G27463 NA non-coding upstream 807313 37777069 ~ 37777318 (-)
AMCG00007907 NA other downstream 120544 36842475 ~ 36846583 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other downstream 956132 36003193 ~ 36010995 (-)
G26961 LOC101154678 other downstream 2097320 34869435 ~ 34869807 (-)
AMCG00007835 LOC107594750 other downstream 5150976 31804899 ~ 31816151 (-)
AMCG00007822 NA other downstream 5624335 31338716 ~ 31342792 (-)
AMCG00007929 NA other upstream 270328 37240084 ~ 37242983 (-)
G27416 blcap,bc10 other upstream 525155 37494911 ~ 37499392 (-)
G27437 NA other upstream 597861 37567617 ~ 37569284 (-)
G27439 NA other upstream 601201 37570957 ~ 37571488 (-)
G27442 chd6 other upstream 603278 37573034 ~ 37588525 (-)

Expression


Co-expression Network