G27400 (blcap,bc10)


Basic Information

Item Value
gene id G27400
gene name blcap,bc10
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37495159 ~ 37499385 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU34287
GCCGGGGTCCTGCGAGAGAAGCAGCTACGCAGGAGAGTGGCGGCGATGGAGGCGGACGCGCTGCGCGGAGAGGAGTGATCCAGGGCCGgactgACTTGATGCGAGCGAAGCCAAAGCACTGCCATCCCAGTCCGGCGCCGCGGCGGCTGCGCGGATCTCCcttctgggtgtgtgtgtgagacggACAGACTTGCAAACATCCGCCACGATGTACTGCCTACAGTGGCTGCTGCCAGTGCTCCTCATCCCCAAGCCCCTGAACCCGGCCCTGTGGTTCAACCACTCCATGTTCATGGGCTTCTACCTGCTCAGCTTTCTTCTGGAAAGGAAGCCCTGTACCATCTGTGCCTTGGTCTTCCTGGCAGCGCTGTTTCTCATCTGCTACAGCTGCTGGGGCAACTGCTTCTTGTACCACTGCGGCGACTCCCCCCTGCCCGAGTCGGCCCATGACCCCAGCATCGTGGCCTCCTAGGCGGGCTGGTCTGCATGGGTCGGTGGACTGTGGACAACgtgcccccttcccccccatCCTCTGCCTCCGCCACCACCCCTGAGGACCCAAGTTATTTCTAAATCCTTGGAAACTGGACAATCTGTATCTGTCACTCATGCTGTGAATATagaatctgtttattttttattttatgattttcttgCTGTAAACTCTTTGTTGAGGACTAATTCTCACCTGCAGGGCGGAAGGCACTTGGGCTGGCTTTGTTTTGTCTAGTCTTACTCTCCTCTCATTCTCTTCCTTGTGccaggtttttttattttctttgttggtCTCCCAGGATCTGTCTCTCCATTTTGCATGGACTGTTTGCCCAGCTATTTCTTCATCGTCAGTGGctgtttatgcattttgtttgatttacatTAGAGAAATCATTACCggttatttttttggttttgtttgttttgtcctcCCAGATTTGTAGGAGGGGAAAGTGCAAagcctgtgtgtttctgttaaaaagcaaaagaaaaatcagcGCAATGAGGACAATGTGCTGCAGAGAAACGCTTGAGTTTTCCCTCATGACTGGACGTGTCGGCGTGGGCTTCTGTGGATATTGATCACCAAGAAGTTGATCTTGCTTACAATCATGAGTTGGCAAAGTTTGGGGTTGGGGGGACGGCATAATTCTCTGTGGAGTCGGTGTGATCTCGTATATCATGGAAAAGTGTAAATCccattcattgtgtgtgtggttacatttaataaagtttatttaaaaaaataataataaatgaaaggaaTTATCTTCCAAGTAAAACCTGAAATGGCGGGCGCAGTTAGTTTCTGTCCTTTCCCTGATTGCCACAAGCTGCCGTGTAAATGACAGATGGATTTATTAACCTGGTCGGGTGGGATAGGAGCCGGTGAAGGGTGACTGCAGCTGTACTTGAATTAACTAGAAGCAGAAGAGCAGGTCTGGGCCGTGATGATTGAGGTGAAGTGCACGAGTGCTTTAAAAGAGAGCCGTTGTGCTGTCTGACCGGGATTAAGACTGTGGGGATGGTATTAAAATGCCTATAGTCTTTTGTCATTCAAGTATATTAGAGtaactttttttgttaatgtcaTGAATATGGTGGCTAAACTATACATGTAATTAAGTGTATTGCGCCAGGGGGAAGGATTCCTCTGGCATGGATCGCACCAGTTTTCCAAAAGTGACTCATGAGGCGTGGTGGCGAAGTTGCTCACACAGCAGGTTTATAAGACTGGGCTTCTCTCAGAAGTGCAGCGTGAGGCCACCAAAGCAGACGGCAAAGATGTGGAAGGAGATCATAGATGAACAAAAGTCCCTGTTTTTGTCACAGACTGTCCACTGAGTTGTGATTGCACTGCATCCAGACATCTCCGCAGAGTAATGTCACTTTTAATTTGAtgagttttttgggggggagggtagggtggataaagaaacaaaataactgatGCAAAGcgtgtttgtattttcttaaattgttgCAATAGCTGAAGAGCTGTTTGCCATTAAAACATACAAGTATTCGTCTTGGTGTGATATTCTAGGAAAcccatgtttttgtatttgacaGTTCTGTCTTGTGTCGTCTGACTTccttgttctgtttgtttgttttggttttgttggaTTTTAATTCACATGTGACAGCATTTACTGGGTCTGTAAATCTTTCTTGCAGTATAGAAATTCAGTAGATTTTGCAAACATTTGCAGTATTTGTAAAGAATGCAGTTTTTGTCAGTCTGAGTGGTACAGCTGGGTTGTTTACAAGGCCCACGTTGCTGTGATTCGCAAGGCAGTGATGACGAGTggcttgaaaaaataaagtgaagtaGGTGCACATTATGTATAATATGAATGTGAAACCTCATGCTATGTTTAACTCAATGCTCGGTTGGGTTTCTATTTTTAGGCattcagaaaagaaaattagatCATTGCCTTTTTGTATGCTGTTGCCAGTCCCTTTGGTATTTGCAGTTCTTCAGGGCTTGCATTCCTCATCTCTGATGCATTGTGGGTTCATGACAGGCGGTCGGGATGGTGCTCCATCAATAACTGGTGAAATTGTCTGTTTGCTTCAGTGCAAGCTGCATCCCTAGATCGTATGACCTAGATCCTGCTATTTTCACTCTGTCGGAGGTGTTAAAGAGTAACTGGAGCTCCTGCTAGATCGTGGAAGGAATTCTTGCAGCCGTAAAATTAGCAACCTCTGCTACAGGCATCTGCTGGACCTGGCTGTGTGGGAGTGCTGGGAGCTGTACTGCTGGGCTGTTGGGCAGTGTTGCAGTAGCCTGCTGGTGTCTTTCACTTGTAGTTGCTTAGTGGGTGAATAAATCTGTCATATCTGTTTAATTTCagatctaaaaacaaacaaaaaactgcaagATTTGCACAATTCCTGTCATGCATAATACGTTTAAATGGTTTTAGTTACttgtaaataattgtttttgttgttgttgatatacACTAGACGAGCCTATAATTTCTGCTACTTATTATCCACATTGGATGTAAGACTTTGGGGAATTCTGTGGCGTTTCACTTGACTGAGACGCCCAACAATGTGGCTCCTCTCTTCCATTGTGGTCGTGTACACCtgacagggtggggggggttgggtaCAGTGTTGCTTTAGGGGACAATGTGCGTTAGCATTATAGTTAAACTATTTAATAGTCACTTTATAGAATACTATTGCAGTTTTAATACTAGGCACATATCAGACAATGCCAGCTTAGCAGTTTTGACAATGTTGAACTTTATTTGCTTCCACCCCCCCCTCACTTTGTTGCTGCTTTAGATACTTTAAGCAGAAAGATGGTAAAACTACTGCTTTGTTTTACTATGTGTGGATTATCTTTCAATGGCtggagaaagacagagggatatatatatatatctttctctctatatatagaaTGAAAACAACTGCTAGGGTTTACAATGCtgatgtgtgtattttcattctGTCTGGGTCTGGTTTTGCTTCCTCCTCACTGCCGGGCAGTGgtcctgtctgtgtctgtggccGCCGAGAGTCCGTGTCTGCATTTCCCATTTGCACCTTTTGTGATGTACGAGCCTGTTGCATGGTACAGTCTACTCCTCGCcaccaaatgtttttaaaaataagctgATAAAATAAATGG

Function

symbol description
blcap Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in myotome. Orthologous to human BLCAP (BLCAP apoptosis inducing factor).
bc10 Orthologous to human BLCAP (BLCAP apoptosis inducing factor).

NR:

description
bladder cancer-associated protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34287 True 3655 lncRNA 0.45 2 37495159 37499385

Neighbor

gene id symbol gene type direction distance location
AMCG00007934 LOC104960738 coding upstream 13988 37469923 ~ 37481171 (+)
AMCG00007931 rims4 coding upstream 149044 37336571 ~ 37346115 (+)
AMCG00007924 NA coding upstream 248352 37244267 ~ 37246807 (+)
AMCG00007925 NA coding upstream 295335 37191982 ~ 37199824 (+)
AMCG00007930 NA coding upstream 324057 37168866 ~ 37171102 (+)
AMCG00007937 chd6 coding downstream 54608 37553993 ~ 37574386 (+)
AMCG00007942 NA coding downstream 79683 37579068 ~ 37590574 (+)
AMCG00007949 pigu coding downstream 503565 38002950 ~ 38010795 (+)
AMCG00007950 NA coding downstream 511791 38011176 ~ 38014794 (+)
AMCG00007947 NA coding downstream 519507 38018892 ~ 38026850 (+)
G27334 NA non-coding upstream 401829 37092649 ~ 37093330 (+)
G27300 NA non-coding upstream 538705 36956182 ~ 36956454 (+)
G27263 NA non-coding upstream 649635 36843981 ~ 36845524 (+)
G27253 NA non-coding upstream 727220 36767653 ~ 36767939 (+)
G27216 NA non-coding upstream 768042 36685310 ~ 36727117 (+)
G27462 NA non-coding downstream 277680 37777065 ~ 37777462 (+)
G27489 NA non-coding downstream 517483 38016868 ~ 38017144 (+)
G27497 NA non-coding downstream 527995 38027380 ~ 38027923 (+)
G27552 NA non-coding downstream 940189 38439574 ~ 38439892 (+)
G27553 NA non-coding downstream 942151 38441536 ~ 38442071 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other upstream 278601 37203870 ~ 37216558 (+)
AMCG00007889 NA other upstream 1192318 36296218 ~ 36302841 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other upstream 1874358 35610982 ~ 35620801 (+)
AMCG00007854 NA other upstream 3700218 33763513 ~ 33794941 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other upstream 6054781 31414154 ~ 31440378 (+)
G27518 NA other downstream 645599 38144984 ~ 38146850 (+)
AMCG00007952 romo1,LOC102788570 other downstream 669185 38168570 ~ 38170146 (+)
AMCG00007957 raly other downstream 856544 38355929 ~ 38423155 (+)
G27551 NA other downstream 932660 38432045 ~ 38436595 (+)
AMCG00007970 rab22a,LOC107596793 other downstream 1193354 38692739 ~ 38708915 (+)

Expression


Co-expression Network