G27442 (chd6)


Basic Information

Item Value
gene id G27442
gene name chd6
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 37573034 ~ 37588525 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU34329
CTTGTGGGCGAACCCGGTCATCTTCAGCACGTAGACTTTGTTGTAGAACTGGATGAGGTCACCTCTCAACTCTCCGCCACACATGTCTGACCCTGAGCCCCTCTCATCCTCCTCGactgtggggggtgggggTATGATGATAATCACAAGTTTGGTACTGTGCAGGAGACCTATAAACATTAATAAGTGGATAATAAAAGACTTTACATGAAAATCTCTGACCTACACACCACACACCGGTAACTTGGTAGCGCAGTACTAACAGGGAGGTTGACAGTGGGAGGTCTACTGTAAATCTCCCTCCTTCTCTACtgcctgctcctcctcctcctcctcctcctgctgctgctgctgctgctgctgctgctgctcctcccCCTCATCctcctttccctcctcctcttcccggCCGTCCTCAGGAGCTGCCGAGGGAGATTCGGGGAGGGTCTGCTCTGTGGGGTCCCTGCTCAGGCTGGCCGGCTCTGGGGGGGCACAGTCAGTCTTTGTGCAGCTGTCACCCACAGAACCCAccactccctcctcctccctcagtTTCCTCTTCTTCCGTTTGGGGCTGCCGGTGCTGTCCGCGGGGCAGGCCTGCTGCATGCTGGGCAGGGCCATGCTGAGCCCGTGGGGGAGGAACATGTGCGGGTAGAGCAGTCCGTGGGACACGCCTGGGATCAGGAAAGGGTTGAACGCCAGGtgcccaccaccaccactactgctgctgcttgcAGTCGCTGTTGCCGTGGTGGGCGTGGTGCCAGCAGACTCTGCAGGGCTGCTCACAGGCTTGCCCTCTGACAGCAGCTTGTCCTCGTTCCTCGTCTCCGTGTCCCCAGCCTCAGAGACCGATGCAGGGCCTCCAGTACTGCCTGGGCTGCCTGGAGCGGCATTGGAGGCAACGGAGACAGGGGTGCCATTTCCAGATCCTGCGGTGCTCACCGTGGCGGTGGGGGGCGCCGATCCCACTGAGGAGGTGGTGGTGCAAGAGGGGGTGCTCGTGGTGGGTGGCTGGCTCAGGAGCCCGCTCACGCTGAACATGTGGGGCTGCACGGCCGCCATGCCGTGGAGCATCATGGGAAGCATGCTCAGCCCGTTCTTGGCGTCCTCGCTGGCTGACACCGCAGCGAACCCATGAGGGAAACCCATGAGCCCAGCCAGGGGGATGCCCTGCACACTGCGCAGGCTCTGCAGGCTCACCAGGTCCATGCTGCCGATCAGCCCGTTCATGAACAGCGGCCCCATAGCGGAGGAAGAGTCTGCCATCAGCACCCCCGCCGCCTTCGTCATCTCGCTGCGCGGACGCCGGCCTCTGCGTCGAGGGCCTGGGTCACGCGACACCGGCTCCGTCAGGATGCGGTTAAACTTGCCTTCAGGCAGAAACCCctgcaaaacaggaaaaacagacaGGTGTGAGCCCAGAGTGGGGATATTACCTTCCCACACAGGACCTTCACACTAAAACTCTAAAGGGCGTCT

Function

symbol description
chd6 Predicted to enable several functions, including ATP binding activity; DNA binding activity; and DNA helicase activity. Predicted to be located in nucleus. Orthologous to human CHD6 (chromodomain helicase DNA binding protein 6).

NR:

description
PREDICTED: chromodomain-helicase-DNA-binding protein 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34329 True 1485 TUCP 0.61 2 37573034 37588525

Neighbor

gene id symbol gene type direction distance location
AMCG00007939 NA coding downstream 53911 37500784 ~ 37519123 (-)
AMCG00007941 tmem74b,LOC102310340,LOC102787133 coding downstream 82201 37487728 ~ 37490833 (-)
AMCG00007935 NA coding downstream 134525 37423717 ~ 37438509 (-)
AMCG00007936 NA coding downstream 168171 37404441 ~ 37404863 (-)
AMCG00007933 NA coding downstream 189439 37369911 ~ 37383595 (-)
AMCG00007943 LOC108442925 coding upstream 202916 37791441 ~ 37827192 (-)
AMCG00007945 ptprt coding upstream 277925 37866450 ~ 37876752 (-)
AMCG00007946 LOC106565046 coding upstream 324053 37912578 ~ 37916476 (-)
AMCG00007944 LOC106582631 coding upstream 336746 37925271 ~ 37936478 (-)
AMCG00007953 NA coding upstream 557994 38146519 ~ 38148924 (-)
G27438 NA non-coding downstream 2153 37570259 ~ 37570881 (-)
G27436 LOC107666014 non-coding downstream 5468 37567203 ~ 37567566 (-)
G27435 NA non-coding downstream 6051 37566769 ~ 37566983 (-)
G27335 NA non-coding downstream 479734 37092649 ~ 37093300 (-)
G27302 NA non-coding downstream 603278 36967127 ~ 36969756 (-)
G27463 NA non-coding upstream 188544 37777069 ~ 37777318 (-)
G27491 NA non-coding upstream 428705 38017230 ~ 38017469 (-)
G27557 NA non-coding upstream 851078 38439603 ~ 38439862 (-)
G27626 NA non-coding upstream 1122327 38710852 ~ 38712337 (-)
G27639 NA non-coding upstream 1160602 38749127 ~ 38767568 (-)
G27439 NA other downstream 1546 37570957 ~ 37571488 (-)
G27437 NA other downstream 3750 37567617 ~ 37569284 (-)
G27416 blcap,bc10 other downstream 73642 37494911 ~ 37499392 (-)
AMCG00007929 NA other downstream 330051 37240084 ~ 37242983 (-)
AMCG00007907 NA other downstream 726451 36842475 ~ 36846583 (-)
G27502 NA other upstream 497404 38085929 ~ 38091878 (-)
G27522 NA other upstream 572761 38161286 ~ 38164542 (-)
AMCG00007984 NA other upstream 1316233 38904758 ~ 38907811 (-)
AMCG00007983 NA other upstream 1336056 38924581 ~ 38937663 (-)
AMCG00007990 ppp1r16b,LOC106566117,LOC107558141 other upstream 1444262 39032787 ~ 39049597 (-)

Expression


Co-expression Network