G27561


Basic Information

Item Value
gene id G27561
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38481297 ~ 38482391 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU34473
TTCAGCACTTAAgcattttattatctttttaaacAGCATGACCTGCAGGATCGCTCTCTGCTCAGGTCGGTGCAAAGAGTCCCAACCCAACCTCGCCACAGCTGGTACCACAGCACCAGATCAAAGCCAGGCAGCGGCATGCGCAGAGGGCTTCACAGTACCAGGAACCGGCCGTAATGAGGCGGCCATAAAAGTGCAGCCGCGCCAGAGCCAGATAATAAAAATGAGTAACGCGAACAAGAGACCCGAAATGACATCTCGGGTGCCAGATGCACCACCTGTTTCCCATTGACACTAAACTActtcttacacacacaaaaagcaaagcAGCACACAGGGCAGTCAGACACCCCTGGGGACGGACTCTAAAGTTTTATGGTTCCAGCGTAGCTAATGGCACAGACTTGCTTCAGGGttccattttccatgactttccaggacaatttccattattttctagGGAAAAAATCACAAGATATTTTCCCGTTTGACATATTCAGTCAATgctcaaaaataacattaataatgtcCATAAGTCAGTGTCCATAATCATATTTGTACACAGATTAACTGCTGCCATTACTAAAGTTCTACGTAAATAGTTCTATGTAAGGTACGTTACTGAATTTATGCCAATACTAAATCTCTTCACCCTACCAAACTACTtcaaaagtacagtaagtggGTCATTCCATGCCAAATGAACAtagaaaagtgtatttcaacTCTCATCTCAGCATtatgaaattgattttatagTTAGAAAAATATGGTAAGCACTCCTGCAATATggttttgttgaaaataaatctccaagaaattaaactaattgatGACATGCAATGCTTTCATTTCCTAGAACtcattttgatttttgtttttggaaataattttttcccccccagacTTTTCCAGgttgaaaacatttttgacTATTGTTCCcgacttttcaggtttttccatGACCATGGGAAACTGGTGCATCCAACACCTTCAATCCTGGACAGCCTGACTCCACCCCTAACGCAGCTCATTGGCTTATTGAACCTAATGAGGGGGCGGGGGGATCCTCTGGCCTCATTCTCATCCTCANNN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34473 True 1095 lncRNA 0.42 1 38481297 38482391

Neighbor

gene id symbol gene type direction distance location
AMCG00007956 NA coding upstream 4809 38473716 ~ 38476488 (+)
AMCG00007948 NA coding upstream 394546 38080756 ~ 38086751 (+)
AMCG00007951 LOC107385061,LOC106582629 coding upstream 410454 38067388 ~ 38070843 (+)
AMCG00007947 NA coding upstream 454447 38018892 ~ 38026850 (+)
AMCG00007950 NA coding upstream 466503 38011176 ~ 38014794 (+)
AMCG00007959 pmepa1,LOC106582623 coding downstream 82084 38564475 ~ 38570223 (+)
AMCG00007965 NA coding downstream 93731 38576122 ~ 38605013 (+)
AMCG00007963 NA coding downstream 138731 38621122 ~ 38627736 (+)
AMCG00007964 NA coding downstream 154091 38636482 ~ 38661331 (+)
AMCG00007971 NA coding downstream 231370 38713761 ~ 38726766 (+)
G27553 NA non-coding upstream 39226 38441536 ~ 38442071 (+)
G27552 NA non-coding upstream 41405 38439574 ~ 38439892 (+)
G27497 NA non-coding upstream 453374 38027380 ~ 38027923 (+)
G27489 NA non-coding upstream 464153 38016868 ~ 38017144 (+)
G27462 NA non-coding upstream 703835 37777065 ~ 37777462 (+)
G27581 NA non-coding downstream 189480 38671871 ~ 38729032 (+)
G27648 NA non-coding downstream 310058 38792449 ~ 38834594 (+)
G27667 NA non-coding downstream 373140 38855531 ~ 38855767 (+)
G27670 NA non-coding downstream 423663 38906054 ~ 38908182 (+)
G27708 NA non-coding downstream 572148 39054539 ~ 39055627 (+)
G27551 NA other upstream 44702 38432045 ~ 38436595 (+)
AMCG00007957 raly other upstream 58142 38355929 ~ 38423155 (+)
AMCG00007952 romo1,LOC102788570 other upstream 311151 38168570 ~ 38170146 (+)
G27518 NA other upstream 334447 38144984 ~ 38146850 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other upstream 1264739 37203870 ~ 37216558 (+)
AMCG00007970 rab22a,LOC107596793 other downstream 210348 38692739 ~ 38708915 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other downstream 1020688 39503079 ~ 39504377 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other downstream 1028020 39510411 ~ 39592411 (+)
AMCG00008010 NA other downstream 1057829 39540220 ~ 39545607 (+)
AMCG00008020 NA other downstream 1334636 39817027 ~ 39834952 (+)

Expression


Co-expression Network