G27581


Basic Information

Item Value
gene id G27581
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38671871 ~ 38729032 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU34503
GTTAGTTTAGTttttttttttcaaaggggGTTGACACAGCAACGTGTCAGTAAGAACGTGGACGTCGCACCAGGAGAAGTGTGTCGATCTGCTGGGTGTGTTTCCGTGCCCTGGAACGGGCCACGCTGATTCACTCAGCCATTTTCTCCGCCAGACGGCACGACGCTTTGTGTGGCCGGTGCCCCCACTTCCTCAGGGGCGCAAATGGCCATGCTTTTGCTTTCCATACCAGGGCGTTTGTAATTAAAGACTAGCCGTGCAGTTGGGAATGGAGGAATTCACGTTGCGACGTCCACTTTtgctacaaacaaacaaacaaaaacacgcTGTCGGTTCACTTCCACGTCAGCTGTTTTTGCCGAGCGACTGATCCGTTCTGCCGGCTGATGCTCTCGCACTGTTTGTTCTTTGTTGATTTACTGTTGTCACAGCCatcattgtattataattaagaaACATCTTCATGCACTATGTATAAATCAGGTTATCCctactatattttaaaaaatataaatatatatatatataaataaacaatatccaGCCATGGTTAAAGTATTGAACTCTTATGGGTAgtctaggtttttttttttttgtgtataaaaataaaaggaaaaattagCAAAATCTCacaacacaagcaaacaaaaaaagggacCATTTTGTGTCTAggtttattctgtttttattatttttgactaAAACGTCATGGATGtctgaaatacacacaaacacaaacctttAATGTCTTTCATCTCACGATGGCatactaaaaagaaaacatgaaaaaagatAACTTGCAAAACTGGGAGGGGGAGAAGGGAAAATTTCAAACAAGAACTTTTTAAAGATGTGTAAAACGAGAGGCGGTTGGCGCTGCTCTTGCTGCTGCAAGGTGGGCTGAGTGGCTGAGTAGGCCTGTCCTGAGCGCAGGGGTGATAGACACTACATAGAGCAGGAGGGAAGCAACAGGACATCTACATGTTACCACAGCAGTTGGGCAActgttttgtatgtatataaataacagtCTATCTAAGGAAATTAATATTCGTAGTAAACTAGTCTATGGCGTAAAAACCTACCCTGTTCGACTATGTAGCATcttaataaattaaaggaataaaacCCCGAACTTACTTTTTCCCTTGTCAAAAGTTATTTATGAGTTTTTGCTTTAAATGGTGG

Function

GO:

id name namespace
GO:0023014 signal transduction by protein phosphorylation biological_process
GO:0000165 MAPK cascade biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34503 True 1188 lncRNA 0.40 2 38671871 38729032

Neighbor

gene id symbol gene type direction distance location
AMCG00007964 NA coding upstream 10540 38636482 ~ 38661331 (+)
AMCG00007963 NA coding upstream 44135 38621122 ~ 38627736 (+)
AMCG00007965 NA coding upstream 66858 38576122 ~ 38605013 (+)
AMCG00007959 pmepa1,LOC106582623 coding upstream 101648 38564475 ~ 38570223 (+)
AMCG00007956 NA coding upstream 195383 38473716 ~ 38476488 (+)
AMCG00007968 stx16 coding downstream 28824 38757856 ~ 38767584 (+)
AMCG00007969 npepl1,LOC107666140 coding downstream 39179 38768211 ~ 38784621 (+)
AMCG00007979 NA coding downstream 132495 38861527 ~ 38898891 (+)
AMCG00007981 NA coding downstream 171296 38900328 ~ 38904511 (+)
AMCG00007978 prelid3b,LOC108231491 coding downstream 180253 38909285 ~ 38917976 (+)
G27561 NA non-coding upstream 189480 38481297 ~ 38482391 (+)
G27553 NA non-coding upstream 229800 38441536 ~ 38442071 (+)
G27552 NA non-coding upstream 231979 38439574 ~ 38439892 (+)
G27497 NA non-coding upstream 643948 38027380 ~ 38027923 (+)
G27489 NA non-coding upstream 654727 38016868 ~ 38017144 (+)
G27648 NA non-coding downstream 63417 38792449 ~ 38834594 (+)
G27667 NA non-coding downstream 126499 38855531 ~ 38855767 (+)
G27670 NA non-coding downstream 177022 38906054 ~ 38908182 (+)
G27708 NA non-coding downstream 325507 39054539 ~ 39055627 (+)
G27709 NA non-coding downstream 330499 39059531 ~ 39059734 (+)
G27551 NA other upstream 235276 38432045 ~ 38436595 (+)
AMCG00007957 raly other upstream 248716 38355929 ~ 38423155 (+)
AMCG00007952 romo1,LOC102788570 other upstream 501725 38168570 ~ 38170146 (+)
G27518 NA other upstream 525021 38144984 ~ 38146850 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other upstream 1455313 37203870 ~ 37216558 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other downstream 774047 39503079 ~ 39504377 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other downstream 781379 39510411 ~ 39592411 (+)
AMCG00008010 NA other downstream 811188 39540220 ~ 39545607 (+)
AMCG00008020 NA other downstream 1087995 39817027 ~ 39834952 (+)
G27974 NA other downstream 1327600 40056632 ~ 40059386 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G652845 NA misc NC_048571.1 CM023225.2 79990609 ~ 79992859 (+)