G27639


Basic Information

Item Value
gene id G27639
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38749127 ~ 38767568 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU34572
tttatttatatttttgttttaaacattctcCAGTTGGTGGCTCATTTGGGTTCAGGATGCTTTGCACAACGTTTCAGGACTGTGGATTAGGACTGTTCAGTTGCACAAGGGTGGGTCACTCACTCGACAAACAACAGACATTCTCCGattctcactcacacacaccactAACAGAAGATTTTAGTATATCCACTTAAAGCACAAGGAATGGAATTTAAACTGCTTGCAAaggtataaaaatatatccaatGTATATCACACCTGGAGGGGGGTTGGTggccattacttatttttacagGCCACAACAGCATGACATCGGACCCCGACAGGAGAGAGACAAAGGCAGATGAGAAGTGAGCAGTGGAGACACATTTGGTCCTTAATCCTGTGGGAGCCCCACACAGACAACGCTGAGACGAGGGGCGGACGCAGGAGGACTGCGGTCTGCAGGTGCCAGTCTTTAGAGTTCAAACACTGGGAAAGTGATCCTTTGTCCATTTTTCATGAACGATATGactgaatttgatttaattacttaaccaaaggaggggggggggtatgtgCTTCCCAGATTAACTGAAAGCCCAGGTGAGGATTCTTTCAGCCAATCTTTAAGAATTTAATGACATTAAGGTATAAGTACAGCCTGGTCTGGGAAGGAATGGAAtgacattttctatttattcaAATCTTctttacattgttattattaagtgcgagtgtgtgtgagagctaCATTTAGATAGTGGAGTGTGTCACTCAACCAACCAACCATCAATCAACAACCTCCCCCCCGCCTCTCCTGGCATGCAGAATTCCCTTCAGTAGTATTTGCAGCCATGATTAAGGCTGCTCTCAGTTCTGGTCCCAGCGCCGGGGGGTTCAGTTCAGGAGTCTCGCAGTGGAGACAGCTGGTACCTCCACAGAGAAACAATCTGTGAGTGAAGCAACACGGCCCAGGTGCGCGCAGAGCTCCATCATCACACAGAGACCTGCCAGCCCTCTCAAGACAAACGAGATGATATCAAGTCCAAGGCGTTGCTTTGGATACACCTCTGAGTGCAGCTGTGTCTCTGTCGTTCAGGCGCAGGACTGTGCCGGTCAGCTGCCTGGCGGGTCCCGTGGCTGTGAAGGGGGCAGGCTGTTTTCTGAGGGATTGCTGTGCAGGCAGCGCCCATCAAACCCAGCCATGGTGGAATACAATAGAAGAACAAGCCCTCTTCCGGTTGAGTTTTTAACTTGCACTTCccctcttccccctcccccaaagataaaaataaaaaagattagaaaaaaataaattaaaataagatcaaATATAATCtgactcaaaacaaacaaatgaacaaaaagagGCACAGTCTGTCTTAAAAGCAGGACAGTCTTCACTGTCTTTCatctcaaataaaaataaaaaaaacagaaactgtgCTGCTGCCACCCTTGGGAAAAGCTCAGCCGgtacacaacagcacagcaacacaacacaacaaacagagaccacacactgcactgaagcAGACAGGGGCAGTAGGGAGGATGATTTCCAACCTGATTTCCCCCCCCATATAAATCGTACAATCCACAACCCAGGTTGGGGGGGTTCTCCTATCCTCTGTGAAATGTCTTTAAGTGTTACTTCTCTCCTCACAGGTCTACAGATGTACATTATTCACTCATCACAGGATACGGCAGAAAGAAGAGGGCTTCAGGACAATCCAACAGACTGATGTGTAACATACAGGATACGCCCAGTAAAACAGAGAGGCTTAAAGAAAGAATACCGATATGACCCAgtttaaatagtgttttttaGGATAAGTGTTTTGAGTTAGAAGAATGGTACTCCGATCAGACACAAAGCGAACTGATATAAAAAGAATTGAACCTGGCCCTAGTTTTTCAGTTTGTAGGTGTTGGTCCGTGAAGTCCTGTAACTGTGTTTGTTAATTCgtttttagattattattttttttatagacaACGCAGTTCAGAAGACCCCATGGCTCTCCAGGAGCTGGGGTGACCTGCTCATGCCGGTCCAAAAATTCAGGGCCACGGCTATACCTTAGGCACAGCAGCTCTGACTGACAGCAGAGATAAGCTAATCACAGCAACCCGAGAAGAAGCCAACGAGGGGCAAACACAGATACAAAACCAAACTGGACAGAGCAAGACCAAACCATGGCTCAAGCAGGAGGGAGGCTGCAATCAACACGACGACAGAGACGAGGTCATACACGGAGAGTCCAGTGTGTTCCAATGTAGTGAAGGGCAAGCAGAATCTGTAGCTTGTGTTTTGTCCGTCTGACTCTAATCTAACCCCGTCCCCCCTCAAACCCATCCCAGCGTAGCTCTCTGGGCCCCCCTGCTTCTTGACGAGATCATTCAAATCAGTAATCGGCTAATCAACCTGGCTGGGTGGGGCCAAAAGTAGTGTTTCACAGACCTGATCCCGCCCCCCACCATCCCACTAGTTTCTGTTACAATTGCAATTCTCCTTGACTCACTGGCTCTCGACAGTTTGCTGAAGAGTCCGGATGCCTCAGCTTCTGTAATATGAGTCTCAATTAAGTTGTTGAGAGGCCTGTTTGAGCAGATaaacagcaggacagtgggGGCGCCCTAGGACTAGGGCTGAGAATGCTAGAGGTTGGGCAGTGATACCTGGGTGGGTGATTCACAAACAGGGCTCCCTGCAATACAGTGCTGAGGCGGGTCAGCTCAGACAAGGAGAGAGTGGGCAGTGTGTTTATATAGACTATGGCTTGGTACTGGGACGAACCATGCTTGGGTTCCTGGGTCTACAGTACTAGCTGTGCAAACGGGATCAGCATGGGTCCTCTTACTTAATTACTTACGTTTGTTAATAAGTTCTTAATACACATTCAACCAAGGCAGCAGAGGGGTTAGCAGTACAGGCTGGGTCACTgtctcaatcacacacacacacacacacacacacacacacactgaaggaTTACGTGGCCTTCACAGCGATCAGGACGAGGATGAGGACAATGACGATGACAAACAGGATAAAAATGACCAGCATCTTGCGGTTCTTCTTCTGGTACTGCTCTgc
>TU34574
tttatttatatttttgttttaaacattctcCAGTTGGTGGCTCATTTGGGTTCAGGATGCTTTGCACAACGTTTCAGGACTGTGGATTAGGACTGTTCAGTTGCACAAGGGTGGGTCACTCACTCGACAAACAACAGACATTCTCCGattctcactcacacacaccactAACAGAAGATTTTAGTATATCCACTTAAAGCACAAGGAATGGAATTTAAACTGCTTGCAAaggtataaaaatatatccaatGTATATCACACCTGGAGGGGGGTTGGTggccattacttatttttacagGCCACAACAGCATGACATCGGACCCCGACAGGAGAGAGACAAAGGCAGATGAGAAGTGAGCAGTGGAGACACATTTGGTCCTTAATCCTGTGGGAGCCCCACACAGACAACGCTGAGACGAGGGGCGGACGCAGGAGGACTGCGGTCTGCAGGTGCCAGTCTTTAGAGTTCAAACACTGGGAAAGTGATCCTTTGTCCATTTTTCATGAACGATATGactgaatttgatttaattacttaaccaaaggaggggggggggtatgtgCTTCCCAGATTAACTGAAAGCCCAGGTGAGGATTCTTTCAGCCAATCTTTAAGAATTTAATGACATTAAGGTATAAGTACAGCCTGGTCTGGGAAGGAATGGAAtgacattttctatttattcaAATCTTctttacattgttattattaagtgcgagtgtgtgtgagagctaCATTTAGATAGTGGAGTGTGTCACTCAACCAACCAACCATCAATCAACAACCTCCCCCCCGCCTCTCCTGGCATGCAGAATTCCCTTCAGTAGTATTTGCAGCCATGATTAAGGCTGCTCTCAGTTCTGGTCCCAGCGCCGGGGGGTTCAGTTCAGGAGTCTCGCAGTGGAGACAGCTGGTACCTCCACAGAGAAACAATCTGTGAGTGAAGCAACACGGCCCAGGTGCGCGCAGAGCTCCATCATCACACAGAGACCTGCCAGCCCTCTCAAGACAAACGAGATGATATCAAGTCCAAGGCGTTGCTTTGGATACACCTCTGAGTGCAGCTGTGTCTCTGTCGTTCAGGCGCAGGACTGTGCCGGTCAGCTGCCTGGCGGGTCCCGTGGCTGTGAAGGGGGCAGGCTGTTTTCTGAGGGATTGCTGTGCAGGCAGCGCCCATCAAACCCAGCCATGGTGGAATACAATAGAAGAACAAGCCCTCTTCCGGTTGAGTTTTTAACTTGCACTTCccctcttccccctcccccaaagataaaaataaaaaagattagaaaaaaataaattaaaataagatcaaATATAATCtgactcaaaacaaacaaatgaacaaaaagagGCACAGTCTGTCTTAAAAGCAGGACAGTCTTCACTGTCTTTCatctcaaataaaaataaaaaaaacagaaactgtgCTGCTGCCACCCTTGGGAAAAGCTCAGCCGgtacacaacagcacagcaacacaacacaacaaacagagaccacacactgcactgaagcAGACAGGGGCAGTAGGGAGGATGATTTCCAACCTGATTTCCCCCCCCATATAAATCGTACAATCCACAACCCAGGTTGGGGGGGTTCTCCTATCCTCTGTGAAATGTCTTTAAGTGTTACTTCTCTCCTCACAGGTCTACAGATGTACATTATTCACTCATCACAGGATACGGCAGAAAGAAGAGGGCTTCAGGACAATCCAACAGACTGATGTGTAACATACAGGATACGCCCAGTAAAACAGAGAGGCTTAAAGAAAGAATACCGATATGACCCAgtttaaatagtgttttttaGGATAAGTGTTTTGAGTTAGAAGAATGGTACTCCGATCAGACACAAAGCGAACTGATATAAAAAGAATTGAACCTGGCCCTAGTTTTTCAGTTTGTAGGTGTTGGTCCGTGAAGTCCTGTAACTGTGTTTGTTAATTCgtttttagattattattttttttatagacaACGCAGTTCAGAAGACCCCATGGCTCTCCAGGAGCTGGGGTGACCTGCTCATGCCGGTCCAAAAATTCAGGGCCACGGCTATACCTTAGGCACAGCAGCTCTGACTGACAGCAGAGATAAGCTAATCACAGCAACCCGAGAAGAAGCCAACGAGGGGCAAACACAGATACAAAACCAAACTGGACAGAGCAAGACCAAACCATGGCTCAAGCAGGAGGGAGGCTGCAATCAACACGACGACAGAGACGAGGTCATACACGGAGAGTCCAGTGTGTTCCAATGTAGTGAAGGGCAAGCAGAATCTGTAGCTTGTGTTTTGTCCGTCTGACTCTAATCTAACCCCGTCCCCCCTCAAACCCATCCCAGCGTAGCTCTCTGGGCCCCCCTGCTTCTTGACGAGATCATTCAAATCAGTAATCGGCTAATCAACCTGGCTGGGTGGGGCCAAAAGTAGTGTTTCACAGACCTGATCCCGCCCCCCACCATCCCACTAGTTTCTGTTACAATTGCAATTCTCCTTGACTCACTGGCTCTCGACAGTTTGCTGAAGAGTCCGGATGCCTCAGCTTCTGTAATATGAGTCTCAATTAAGTTGTTGAGAGGCCTGTTTGAGCAGATaaacagcaggacagtgggGGCGCCCTAGGACTAGGGCTGAGAATGCTAGAGGTTGGGCAGTGATACCTGGGTGGGTGATTCACAAACAGGGCTCCCTGCAATACAGTGCTGAGGCGGGTCAGCTCAGACAAGGAGAGAGTGGGCAGTGTGTTTATATAGACTATGGCTTGGTACTGGGACGAACCATGCTTGGGTTCCTGGGTCTACAGTACTAGCTGTGCAAACGGGATCAGCATGGGTCCTCTTACTTAATTACTTACGTTTGTTAATAAGTTCTTAATACACATTCAACCAAGGCAGCAGAGGGGTTAGCAGTACAGGCTGGGTCACTgtctcaatcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34572 True 3085 lncRNA 0.47 3 38764444 38767568
TU34574 False 3015 lncRNA 0.47 3 38749127 38767568

Neighbor

gene id symbol gene type direction distance location
AMCG00007972 NA coding downstream 6084 38733689 ~ 38743043 (-)
AMCG00007973 ppp4r1 coding downstream 56353 38679465 ~ 38692774 (-)
AMCG00007974 NA coding downstream 69976 38676674 ~ 38679151 (-)
AMCG00007967 NA coding downstream 103145 38635057 ~ 38645982 (-)
AMCG00007966 pck1 coding downstream 136546 38608702 ~ 38612581 (-)
AMCG00007975 nelfcd,LOC107554192,LOC107685805 coding upstream 17968 38785536 ~ 38790785 (-)
AMCG00007976 NA coding upstream 26536 38794104 ~ 38817732 (-)
AMCG00007977 NA coding upstream 63537 38831105 ~ 38836137 (-)
AMCG00007982 slc32a1,LOC108436412,LOC108272428 coding upstream 175267 38942835 ~ 38949522 (-)
AMCG00007988 NA coding upstream 209347 38976915 ~ 38985485 (-)
G27626 NA non-coding downstream 36790 38710852 ~ 38712337 (-)
G27557 NA non-coding downstream 309265 38439603 ~ 38439862 (-)
G27491 NA non-coding downstream 731658 38017230 ~ 38017469 (-)
G27463 NA non-coding downstream 971809 37777069 ~ 37777318 (-)
G27438 NA non-coding downstream 1178246 37570259 ~ 37570881 (-)
G27661 NA non-coding upstream 8593 38776161 ~ 38779752 (-)
G27668 NA non-coding upstream 87980 38855548 ~ 38855777 (-)
G27686 NA non-coding upstream 153402 38920970 ~ 38922688 (-)
G27833 NA non-coding upstream 687472 39455040 ~ 39455858 (-)
G27904 NA non-coding upstream 996362 39763930 ~ 39764417 (-)
G27522 NA other downstream 584585 38161286 ~ 38164542 (-)
G27502 NA other downstream 657249 38085929 ~ 38091878 (-)
G27442 chd6 other downstream 1160602 37573034 ~ 37588525 (-)
G27439 NA other downstream 1177639 37570957 ~ 37571488 (-)
G27437 NA other downstream 1179843 37567617 ~ 37569284 (-)
AMCG00007984 NA other upstream 137190 38904758 ~ 38907811 (-)
AMCG00007983 NA other upstream 157013 38924581 ~ 38937663 (-)
AMCG00007990 ppp1r16b,LOC106566117,LOC107558141 other upstream 265219 39032787 ~ 39049597 (-)
G27720 NA other upstream 286585 39054153 ~ 39055679 (-)
AMCG00007993 dynlrb1,LOC106565026 other upstream 320989 39088557 ~ 39091895 (-)

Expression


Co-expression Network