G27661


Basic Information

Item Value
gene id G27661
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38776161 ~ 38779752 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU34601
CGTCACTTCGTCCTCATCGGTTCCACCGCATTGGTGCCAGTTCATACTACTCTACttgtattcaaaacaaaacaataatgaaacaaaagacatctggagttttttattttttcattttatttaatttctaacGTCCAGCTTTTATATCCACCATGTGTATGACAAACGTTGCTCTTtgcaccgacacacacacacacaccagccctGGGATCAGCAAACAGAAATACCACAACAGCAGACCATTTCGTTTTTCTTCCTTGTTCCCCAGAACGATCACTCAGGTTTGGCATCGAGTCACTTTGGCAAGGCAGTAACCGAGCACACAGTGGGTTTTATACTCTTACAGATAAGCGCTTCTCTTGCACAACACCAGGGCAGCACTACTCCAGTTGGCTCAGTGGCATTAGTCCCCACTGCAGCGTGATCTTCTACAGGTCAAAGACAGAGGGTGGGACAATTACCTGATTGGAGTCACGATTTAGGTTGTACTGATAAGTCAAAACCCCTGTTGATTCCTGGTCGCTATTGGACAGACAAAACCCCCAGGCCCTGCAACAGAGTGGCCCCACCCAGGCCCCAGAGGAGCCCCCCAGTGTCTGCTGGGCTCTTAATTGGACCAATAATGGCCTGGTCAGTTTTTTTCAGCTCCAATCCAGGAGCATGCCAGGCTGGCCAGTAAGTGACCACAGCTGGGGGCCAGAGTGTCACACCAGGCCACAGACAAGGGGAGCCCTCCCGGAATAGGGTTGAGGAACTCGCTGCCTTCGGGGACTGGACATGCCCTGGGCTAAGTCAGCTGCTTGTGGTCTTCCCTGGACAAGCGTCACGCACATCTCCTGTTATTAAGGCGTTGACAGTTCAGCTGGCACAGCCCGGGCAGCCAGGTTCCTCCTCTAACCCCCCGCTTCTGACAATGCCTGCCTGAcgcaaacagaaaaacacccaGCACAGTGGAGTGTGTGGAtagtttaaaggaaaaaaaagaaaaaggcgaAAGCAtcgagaaaaaaaacagaattgagTTAATAAGAACAaagtggaaagaagaaaaataatgatttattattagtagtattaatacTATTTCATCAATTGGAATCTAGACTTGTAAAGGTCATTTGTTGAGACTGATCAGTGCGGTGGGGCTGGAGGCTGGAGGGCCATTAGACCAGTCTTCTCCTCTTGCAGTCGCGTTCCATCTGCTCTGCAGGGGGTCCGTCCTGGGCACCCAGGGGGGACACCATATTGAGCAGGGGGTCCTCGGAGGCCTGGCCGAACAGCGCCAGCAGCAGGGCCACTCCAAACCCTGTggctctctccccGTATGCACGGGGGAGGCGATGTCCACGTGCACCCAGACCCCTGGCCAGTCGAAGCCGAGGTGCGAGGCGATGAACAGGCCGGCGCAGGAGCTCTGGGCGTTCTCACGGTCCTGAGGAGGCAGGACACAACAATGAAACACACAAAGGAgggaaaagaaagcaaatgGTTGAGTGAAAGTGCCATGGTTTGTGGTAAAGCGAGCAGAGGCCAGTCAATGTGAGCGAATGCAGGTAAAGCCTCcctaattaatattattaacagcCCACAAGATTTCCATCTCCTGGGTGCAGTTAAAACACCCTTACTGTCACTATGGTTTTGAAATCGAGCACACCCGTTATGAGCCCTGCTTTCGGGCTGCCGTCATCTTGATAGACAAGTTCTGCCCTGACTGCAGAAAGTTAGAGcgattcaaaagaaaaagagctTCTGAATCTGTGACCAAtgccaaaaaagttaaataatcaTGATAAGTGATAATCGGGCAGAGTAATTTAACATGAATTTAAAGTAAtagtgaagttttttttttatccaactgaatcattataaaaaaaaaaataatgttacattAGGTTTACAGTTAGCCATTTAtttagaataatatattttaaagattgctTAAAGAATACCAGTTCAAA
>TU34602
CGTCACTTCGTCCTCATCGGTTCCACCGCATTGGTGCCAGTTCATACTACTCTACttgtattcaaaacaaaacaataatgaaacaaaagacatctggagttttttattttttcattttatttaatttctaacGTCCAGCTTTTATATCCACCATGTGTATGACAAACGTTGCTCTTtgcaccgacacacacacacacaccagccctGGGATCAGCAAACAGAAATACCACAACAGCAGACCATTTCGTTTTTCTTCCTTGTTCCCCAGAACGATCACTCAGGTTTGGCATCGAGTCACTTTGGCAAGGCAGTAACCGAGCACACAGTGGGTTTTATACTCTTACAGATAAGCGCTTCTCTTGCACAACACCAGGGCAGCACTACTCCAGTTGGCTCAGTGGCATTAGTCCCCACTGCAGCGTGATCTTCTACAGGTCAAAGACAGAGGGTGGGACAATTACCTGATTGGAGTCACGATTTAGGTTGTACTGATAAGTCAAAACCCCTGTTGATTCCTGGTCGCTATTGGACAGACAAAACCCCCAGGCCCTGCAACAGAGTGGCCCCACCCAGGCCCCAGAGGAGCCCCCCAGTGTCTGCTGGGCTCTTAATTGGACCAATAATGGCCTGGTCAGTTTTTTTCAGCTCCAATCCAGGAGCATGCCAGGCTGGCCAGTAAGTGACCACAGCTGGGGGCCAGAGTGTCACACCAGGCCACAGACAAGGGGAGCCCTCCCGGAATAGGGTTGAGGAACTCGCTGCCTTCGGGGACTGGACATGCCCTGGGCTAAGTCAGCTGCTTGTGGTCTTCCCTGGACAAGCGTCACGCACATCTCCTGTTATTAAGGCGTTGACAGTTCAGCTGGCACAGCCCGGGCAGCCAGGTTCCTCCTCTAACCCCCCGCTTCTGACAATGCCTGCCTGAcgcaaacagaaaaacacccaGCACAGTGGAGTGTGTGGAtagtttaaaggaaaaaaaagaaaaaggcgaAAGCAtcgagaaaaaaaacagaattgagTTAATAAGAACAaagtggaaagaagaaaaataatgatttattattagtagtattaatacTATTTCATCAATTGGAATCTAGACTTGTAAAGGTCATTTGTTGAGACTGATCAGTGCGGTGGGGCTGGAGGCTGGAGGGCCATTAGACCAGTCTTCTCCTCTTGCAGTCGCGTTCCATCTGCTCTGCAGGGGGTCCGTCCTGGGCACCCAGGGGGGACACCATATTGAGCAGGGGGTCCTCGGAGGCCTGGCCGAACAGCGCCAGCAGCAGGGCCACTCCAAACCCTGTggctctctccccGTATGCACGGGGGAGGCGATGTCCACGTGCACCCAGACCCCTGGCCAGTCGAAGCCGAGGTGAACTCGCTGAAGTGCAGCTCAGGGCAGAAGACCAGGGGGTGTGCCAGGTCCCCGCTGCTGCGCCCCGCCCGCACGCACGCCGCCTCCCACTGCTCGCTGTTGGTCATCACCGCCGCATGGTACTTCCCTGTCGAGATgcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34601 True 1964 lncRNA 0.47 2 38777237 38779752
TU34602 False 1524 lncRNA 0.52 3 38776161 38779752

Neighbor

gene id symbol gene type direction distance location
AMCG00007972 NA coding downstream 33118 38733689 ~ 38743043 (-)
AMCG00007973 ppp4r1 coding downstream 83387 38679465 ~ 38692774 (-)
AMCG00007974 NA coding downstream 97010 38676674 ~ 38679151 (-)
AMCG00007967 NA coding downstream 130179 38635057 ~ 38645982 (-)
AMCG00007966 pck1 coding downstream 163580 38608702 ~ 38612581 (-)
AMCG00007975 nelfcd,LOC107554192,LOC107685805 coding upstream 5784 38785536 ~ 38790785 (-)
AMCG00007976 NA coding upstream 14352 38794104 ~ 38817732 (-)
AMCG00007977 NA coding upstream 51353 38831105 ~ 38836137 (-)
AMCG00007982 slc32a1,LOC108436412,LOC108272428 coding upstream 163083 38942835 ~ 38949522 (-)
AMCG00007988 NA coding upstream 197163 38976915 ~ 38985485 (-)
G27639 NA non-coding downstream 8593 38749127 ~ 38767568 (-)
G27626 NA non-coding downstream 63824 38710852 ~ 38712337 (-)
G27557 NA non-coding downstream 336299 38439603 ~ 38439862 (-)
G27491 NA non-coding downstream 758692 38017230 ~ 38017469 (-)
G27463 NA non-coding downstream 998843 37777069 ~ 37777318 (-)
G27668 NA non-coding upstream 75796 38855548 ~ 38855777 (-)
G27686 NA non-coding upstream 141218 38920970 ~ 38922688 (-)
G27833 NA non-coding upstream 675288 39455040 ~ 39455858 (-)
G27904 NA non-coding upstream 984178 39763930 ~ 39764417 (-)
G27927 NA non-coding upstream 1010794 39790546 ~ 39791484 (-)
G27522 NA other downstream 611619 38161286 ~ 38164542 (-)
G27502 NA other downstream 684283 38085929 ~ 38091878 (-)
G27442 chd6 other downstream 1187636 37573034 ~ 37588525 (-)
G27439 NA other downstream 1204673 37570957 ~ 37571488 (-)
G27437 NA other downstream 1206877 37567617 ~ 37569284 (-)
AMCG00007984 NA other upstream 125006 38904758 ~ 38907811 (-)
AMCG00007983 NA other upstream 144829 38924581 ~ 38937663 (-)
AMCG00007990 ppp1r16b,LOC106566117,LOC107558141 other upstream 253035 39032787 ~ 39049597 (-)
G27720 NA other upstream 274401 39054153 ~ 39055679 (-)
AMCG00007993 dynlrb1,LOC106565026 other upstream 308805 39088557 ~ 39091895 (-)

Expression


Co-expression Network