G27708


Basic Information

Item Value
gene id G27708
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39054539 ~ 39055627 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU34673
ATTTatctaaatattttgtaaataatgaatgtcCAGGTTTTGAAGGAAGCCGCACACCTGTGTGTGCGTTTAGTATTCCAGCAGCCGCTCCCGCAATATCATGCTGAAGCACGGACACAGTAGGGCAAGACGCATGGAGAGGctattgtacacacacacacacacacacacacacacacacacacagccatggaGAGACATGTACGCACACAGAATGTCCCAAAAGCGTAGTAATGGCCTTGAGGAGTTAATGGTAATGAACAGATTTGTTTCTTGATGCGTTTAATTGCCCTGGGGGTAGAAGCACTGGGCTTTTGCAGTGGTAGCACAGTGAGAGAAAGGGGACAGCAGCTCTAGAATTTTTTTTTGAGAGAACAGATTAATGAGTCTGCAGAGACAGCCCTGGCACAGAGGACAAAGCTGTGAAGAGGACCAAGCTAGGTCGCCAAAGCTGCGCCCCCCAAGCCTCTCATCCACAGTCGACTTTCTGACACATCTGTTTTTCTGGGGAGCGAGATATTGATGATCAAAAAACAGCCCCTCCGGCATCTCTAACCTTGACTGTGCGCCGGTGCTGTCACCCAGCTCTATCACACAGGGGAGAGGGCGATGGGcggcattttttttcttcccctgccGAAACTGGCATCCGTTTCTCTGAACGTTGACGTAGTGTTGAAATGCTGCAAGAGACAGTGGCATGGGAGTGGGGATTTCTGGTAGAATAAATGGAGCAAAATTTGCACCGAAGCAAAACTGTCTTGAAAGTTGTCAAGCAGATGCACCTCATATGGAGCAAAGAGAAGCTTTTGTTCTGTACAGGTGGGTTTGAGTACTCGGTATTCAGCCCAGGTCAGGACAGTGTGTGGAAAGGGGGAAGGTGAAAGATGGGCATTGCTAAGATGATTTTGTTCCCTGGTtttgtcttttctctctctctctctctctttattctACACCCTTGAGCGTCTCTATGAAATCTcattgttttaaagcagaatCCGGACTGTAAGTTAGAGCTTTTATTattgaaagagaaaatgaagaaacaataaGAACTACTACTGATTTTGTAATTACTGGAAAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34673 True 1089 lncRNA 0.46 1 39054539 39055627

Neighbor

gene id symbol gene type direction distance location
AMCG00007987 LOC107703109 coding upstream 1619 39050962 ~ 39052920 (+)
AMCG00007986 NA coding upstream 41688 39004001 ~ 39012851 (+)
AMCG00007980 NA coding upstream 128868 38921036 ~ 38925671 (+)
AMCG00007978 prelid3b,LOC108231491 coding upstream 136563 38909285 ~ 38917976 (+)
AMCG00007981 NA coding upstream 150028 38900328 ~ 38904511 (+)
AMCG00007985 fam210b,LOC102797503 coding downstream 5020 39060647 ~ 39069306 (+)
AMCG00007991 NA coding downstream 48548 39104175 ~ 39112999 (+)
AMCG00007998 NA coding downstream 182421 39238048 ~ 39239628 (+)
AMCG00008001 sox4,LOC108255020,LOC107732138,LOC107722246 coding downstream 321351 39376978 ~ 39378054 (+)
AMCG00008004 NA coding downstream 356063 39411690 ~ 39413775 (+)
G27670 NA non-coding upstream 146357 38906054 ~ 38908182 (+)
G27667 NA non-coding upstream 198772 38855531 ~ 38855767 (+)
G27648 NA non-coding upstream 219945 38792449 ~ 38834594 (+)
G27581 NA non-coding upstream 325507 38671871 ~ 38729032 (+)
G27561 NA non-coding upstream 572148 38481297 ~ 38482391 (+)
G27709 NA non-coding downstream 3904 39059531 ~ 39059734 (+)
G27760 LOC105912234,LOC101475128,LOC102305233,LOC102193169,LOC107093176,LOC103134693 non-coding downstream 150754 39206381 ~ 39208293 (+)
G27781 NA non-coding downstream 210795 39266422 ~ 39266673 (+)
G27788 NA non-coding downstream 235341 39290968 ~ 39291221 (+)
G27881 slc12a5b,LOC107725712,LOC107550951,LOC107747216,LOC107683884 non-coding downstream 548985 39604612 ~ 39604828 (+)
AMCG00007970 rab22a,LOC107596793 other upstream 345624 38692739 ~ 38708915 (+)
G27551 NA other upstream 617944 38432045 ~ 38436595 (+)
AMCG00007957 raly other upstream 631384 38355929 ~ 38423155 (+)
AMCG00007952 romo1,LOC102788570 other upstream 884393 38168570 ~ 38170146 (+)
G27518 NA other upstream 907689 38144984 ~ 38146850 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other downstream 447452 39503079 ~ 39504377 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other downstream 454784 39510411 ~ 39592411 (+)
AMCG00008010 NA other downstream 484593 39540220 ~ 39545607 (+)
AMCG00008020 NA other downstream 761400 39817027 ~ 39834952 (+)
G27974 NA other downstream 1001005 40056632 ~ 40059386 (+)

Expression


Co-expression Network