G27760 (LOC105912234,LOC101475128,LOC102305233,LOC102193169,LOC107093176,LOC103134693)


Basic Information

Item Value
gene id G27760
gene name LOC105912234,LOC101475128,LOC102305233,LOC102193169,LOC107093176,LOC103134693
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39206381 ~ 39208293 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU34734
TGACCTCCaggtacaaatatttattaatgcatccattttaacaatgacagaaaatagaggGAAGGGAAGGTTTTTCATTCTGCTGCATTCAAATCAGACTACGGAAGTGTGTCTGTTTAAGGCACAAATGTcaatgatatttatatatataaaaataaaataaaaagtttctCCCCTCAGAAATGAGATGTTTTCTGATGGTGGGAATTAAGGCTAACAGGCCAGAGCACTCCTTTGGAAAGAGAGCAAGAAACAGGACCAGACACTCAGGGGATGCTTCAAACCCACACGAGCTGGGAATACAGGATTACTGGACTTCAACTGCAATTCTGCTGCCTGCACTTCAAAAGCAAGGCGACCCTTTGTCAAACGGCCATATCTAAAGCGACCCTTGTATTTCAGCAGGACAGCAGGCCGTAGAGATCGGTCATCTACAGTACTGGTCATCGTGCTGCCATCCTGTGCGATGCAACCACTCTCGATTTGAATGAGTCAGAAAAGGAATGCATGTGATCTTTCAAATGATATGGCCTGGATACAGCTCCACCCCCACCATCAGAAAAAACTGAATGGTCCACAGAATGGTATTCAAAAGCtgaacaaaactgaacagaTTACACAGATATTTGGCAAATGGCACATTCTGAAGCATAACGCAGTGGATATGCATTTCGTTACACAGACGTGCGTGGGATACCCCTCGCTAAAGTGTGTCATGCATACAATATTTCCATTGATCCGGTGAATTGGCAATTCAGTTTATAAGGCAGTTAGTCCTGATGAGCTAAAGTTTAGTAAGGCATGCTGCGCGTCTTTGGTTCTAATTGTGCGCAAGAGAAGGCTTTCTAATGACTATATAAGCAAGTGCATAACTTAGATTAAGTGCTAGGCTGCATATTAATAGGAAGTAAATTCCCACAGAATATTGCATCGCTTTAAGAGATTGCCCATTGTTACAATCAAAGCTTTAGAGGCTAATTAAGCCATGATTGTGGAATTGACactaaaatgtgcattattaaGGGTTCAGAATCCACTCTCCTGTGCAAGATCAGCCCTTAATTCATCTACTCCCtaaaaaatactgcaaaataatcaaatttcctagtttgtaatacaaaaatgtaaaaaataatggaatataATCTATAGCTTCTCTAAATTACTTATAGTGGCAAATTGTAAAACCAGACCGGGCTGGCGGGTGAATGTATTCCCTCGTCTTCAGCAGTGCTGTTTGAGCTGGGTGACGCCGCCTTGTGGTCAAGAATGCGAGGCACATTTTGAGGCGGCTGCTGCCCATGAGGTGCCTCACTGGGTCACTGGCTTTGGCGGCTGCACTGGTGCCAGGTTCAGCATTTTGAAGTAAGACACCAGTTGAGTGGGAACCTCAGCCAGCACACTCTGCGCAAGAGCCTCTTTAGGTgcCTGACGAAGTCCCTGTAGGGCACAAACTGCACAATGTCCCTGGCCACAGGCTCTCCTGTGAGGGACTTGAGGACACCACCATCCCCATCCAGAAACTCCATGGCCTTGAAGTCGGCCTCCCCGACGCCCACGATGATGATGGACATCGGCAGCTTGGAGCACGCCACGATCGCCTGCCGTGTCTGGTCCAGGTCGGTGATCTCACCGTCAGTCAGGATCAGCAGCACGAAGTATTGCTGTGGGGGAGACAGGAAGCAG
>TU34735
TGACCTCCaggtacaaatatttattaatgcatccattttaacaatgacagaaaatagaggGAAGGGAAGGTTTTTCATTCTGCTGCATTCAAATCAGACTACGGAAGTGTGTCTGTTTAAGGCACAAATGTcaatgatatttatatatataaaaataaaataaaaagtttctCCCCTCAGAAATGAGATGTTTTCTGATGGTGGGAATTAAGGCTAACAGGCCAGAGCACTCCTTTGGAAAGAGAGCAAGAAACAGGACCAGACACTCAGGGGATGCTTCAAACCCACACGAGCTGGGAATACAGGATTACTGGACTTCAACTGCAATTCTGCTGCCTGCACTTCAAAAGCAAGGCGACCCTTTGTCAAACGGCCATATCTAAAGCGACCCTTGTATTTCAGCAGGACAGCAGGCCGTAGAGATCGGTCATCTACAGTACTGGTCATCGTGCTGCCATCCTGTGCGATGCAACCACTCTCGATTTGAATGAGTCAGAAAAGGAATGCATGTGATCTTTCAAATGATATGGCCTGGATACAGCTCCACCCCCACCATCAGAAAAAACTGAATGGTCCACAGAATGGTATTCAAAAGCtgaacaaaactgaacagaTTACACAGATATTTGGCAAATGGCACATTCTGAAGCATAACGCAGTGGATATGCATTTCGTTACACAGACGTGCGTGGGATACCCCTCGCTAAAGTGTGTCATGCATACAATATTTCCATTGATCCGGTGAATTGGCAATTCAGTTTATAAGGCAGTTAGTCCTGATGAGCTAAAGTTTAGTAAGGCATGCTGCGCGTCTTTGGTTCTAATTGTGCGCAAGAGAAGGCTTTCTAATGACTATATAAGCAAGTGCATAACTTAGATTAAGTGCTAGGCTGCATATTAATAGGAAGTAAATTCCCACAGAATATTGCATCGCTTTAAGAGATTGCCCATTGTTACAATCAAAGCTTTAGAGGCTAATTAAGCCATGATTGTGGAATTGACactaaaatgtgcattattaaGGGTTCAGAATCCACTCTCCTGTGCAAGATCAGCCCTTAATTCATCTACTCCCtaaaaaatactgcaaaataatcaaatttcctagtttgtaatacaaaaatgtaaaaaataatggaatataATCTATAGCTTCTCTAAATTACTTATAGTGGCAAATTGTAAAACCAGACCGGGCTGGCGGGTGAATGTATTCCCTCGTCTTCAGCAGTGCTGTTTGAGCTGGGTGACGCCGCCTTGTGGTCAAGAATGCGAGGCACATTTTGAGGCGGCTGCTGCCCATGAGGTGCCTCACTGGGTCACTGGCTTTGGCGGCTGCACTGGTGCCAGGTTCAGCATTTTGAAGTAAGACACCAGTTGAGTGGGAACCTCAGCCAGCACACTCTGCGCAAGAGCCTCTTTAGGTgACTGACGAAGTCCCTGTAGGGCACAAACTGCACAATGTCCCTGGCCACAGGCTCTCCTGTGAGGGACTTGAGGACACCACCATCCCCATCCAGAAACTCCATGGCCTTGAAGTCGGCCTCCCCGACGCCCACGATGATGATGGACATCGGCAGCTTGGAGCACGCCACGATCGCCTGCCGTGTCTGGTCCAGGTCGGTGATCTCACCGTCAGTCAGGATCAGCAGCACGAAGTATTGCTGTGGGGGAGACAGGAAGCAG

Function

NR:

description
PREDICTED: copine-3-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34734 True 1686 lncRNA 0.45 3 39206381 39208293
TU34735 False 1686 lncRNA 0.45 3 39206381 39208293

Neighbor

gene id symbol gene type direction distance location
AMCG00007991 NA coding upstream 93382 39104175 ~ 39112999 (+)
AMCG00007985 fam210b,LOC102797503 coding upstream 137075 39060647 ~ 39069306 (+)
AMCG00007987 LOC107703109 coding upstream 153461 39050962 ~ 39052920 (+)
AMCG00007986 NA coding upstream 193530 39004001 ~ 39012851 (+)
AMCG00007980 NA coding upstream 280710 38921036 ~ 38925671 (+)
AMCG00007998 NA coding downstream 29755 39238048 ~ 39239628 (+)
AMCG00008001 sox4,LOC108255020,LOC107732138,LOC107722246 coding downstream 168685 39376978 ~ 39378054 (+)
AMCG00008004 NA coding downstream 203397 39411690 ~ 39413775 (+)
AMCG00008005 NA coding downstream 237777 39446070 ~ 39455574 (+)
AMCG00008003 NA coding downstream 248370 39456663 ~ 39463302 (+)
G27709 NA non-coding upstream 146647 39059531 ~ 39059734 (+)
G27708 NA non-coding upstream 150754 39054539 ~ 39055627 (+)
G27670 NA non-coding upstream 298199 38906054 ~ 38908182 (+)
G27667 NA non-coding upstream 350614 38855531 ~ 38855767 (+)
G27648 NA non-coding upstream 371787 38792449 ~ 38834594 (+)
G27781 NA non-coding downstream 58129 39266422 ~ 39266673 (+)
G27788 NA non-coding downstream 82675 39290968 ~ 39291221 (+)
G27881 slc12a5b,LOC107725712,LOC107550951,LOC107747216,LOC107683884 non-coding downstream 396319 39604612 ~ 39604828 (+)
G27960 NA non-coding downstream 749694 39957987 ~ 40003700 (+)
G27973 NA non-coding downstream 843597 40051890 ~ 40060205 (+)
AMCG00007970 rab22a,LOC107596793 other upstream 497466 38692739 ~ 38708915 (+)
G27551 NA other upstream 769786 38432045 ~ 38436595 (+)
AMCG00007957 raly other upstream 783226 38355929 ~ 38423155 (+)
AMCG00007952 romo1,LOC102788570 other upstream 1036235 38168570 ~ 38170146 (+)
G27518 NA other upstream 1059531 38144984 ~ 38146850 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other downstream 294786 39503079 ~ 39504377 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other downstream 302118 39510411 ~ 39592411 (+)
AMCG00008010 NA other downstream 331927 39540220 ~ 39545607 (+)
AMCG00008020 NA other downstream 608734 39817027 ~ 39834952 (+)
G27974 NA other downstream 848339 40056632 ~ 40059386 (+)

Expression


Co-expression Network