G27788


Basic Information

Item Value
gene id G27788
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39290968 ~ 39291221 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU34781
ttgATATTTCCATGGACGGATCtgtctttattttacagaataccCTGTCAGGGGGTGATCTCAGAGCAGTGCGGGTGCATGGCACACAAGTGAATAAAGCAGATGATATGGTTGTACAAATGTAGTGCAAATCTTAGATGTTCGCTGAGAATCCGCGAAAACAAAGTGTTCAGAGAATCGGCTGTGTACATTCCTTCATCCTGGCAGTGTCTATATGTCCTTTATTCAATTCCCACATCCTCCTCCGCCGTCGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34781 True 254 lncRNA 0.45 1 39290968 39291221

Neighbor

gene id symbol gene type direction distance location
AMCG00007998 NA coding upstream 51340 39238048 ~ 39239628 (+)
AMCG00007991 NA coding upstream 177969 39104175 ~ 39112999 (+)
AMCG00007985 fam210b,LOC102797503 coding upstream 221662 39060647 ~ 39069306 (+)
AMCG00007987 LOC107703109 coding upstream 238048 39050962 ~ 39052920 (+)
AMCG00007986 NA coding upstream 278117 39004001 ~ 39012851 (+)
AMCG00008001 sox4,LOC108255020,LOC107732138,LOC107722246 coding downstream 85757 39376978 ~ 39378054 (+)
AMCG00008004 NA coding downstream 120469 39411690 ~ 39413775 (+)
AMCG00008005 NA coding downstream 154849 39446070 ~ 39455574 (+)
AMCG00008003 NA coding downstream 165442 39456663 ~ 39463302 (+)
AMCG00008002 NA coding downstream 181595 39472816 ~ 39482333 (+)
G27781 NA non-coding upstream 24295 39266422 ~ 39266673 (+)
G27760 LOC105912234,LOC101475128,LOC102305233,LOC102193169,LOC107093176,LOC103134693 non-coding upstream 82675 39206381 ~ 39208293 (+)
G27709 NA non-coding upstream 231234 39059531 ~ 39059734 (+)
G27708 NA non-coding upstream 235341 39054539 ~ 39055627 (+)
G27670 NA non-coding upstream 382786 38906054 ~ 38908182 (+)
G27881 slc12a5b,LOC107725712,LOC107550951,LOC107747216,LOC107683884 non-coding downstream 313391 39604612 ~ 39604828 (+)
G27960 NA non-coding downstream 666766 39957987 ~ 40003700 (+)
G27973 NA non-coding downstream 760669 40051890 ~ 40060205 (+)
G28032 NA non-coding downstream 986193 40277414 ~ 40277687 (+)
G28140 NA non-coding downstream 1460254 40751475 ~ 40755976 (+)
AMCG00007970 rab22a,LOC107596793 other upstream 582053 38692739 ~ 38708915 (+)
G27551 NA other upstream 854373 38432045 ~ 38436595 (+)
AMCG00007957 raly other upstream 867813 38355929 ~ 38423155 (+)
AMCG00007952 romo1,LOC102788570 other upstream 1120822 38168570 ~ 38170146 (+)
G27518 NA other upstream 1144118 38144984 ~ 38146850 (+)
G27847 LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675 other downstream 211858 39503079 ~ 39504377 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other downstream 219190 39510411 ~ 39592411 (+)
AMCG00008010 NA other downstream 248999 39540220 ~ 39545607 (+)
AMCG00008020 NA other downstream 525806 39817027 ~ 39834952 (+)
G27974 NA other downstream 765411 40056632 ~ 40059386 (+)

Expression


Co-expression Network