G27833


Basic Information

Item Value
gene id G27833
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39455040 ~ 39455858 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU34831
CTCGTACCTCGTCTGAGGGAGACAAAGGGATCTCCTCCTCGCACCGCCGAGCCGCAGATGGTGAAGCCCGGCCGCCTGGAGCAAGTCTGCGTGGAGAAGCGGGACGGAGTTAAACCAAAGACCCCAGAGATCAGACTCAATCCGTCCGAGATGGTGGGATAAGTTCCCCAGCAAAGCTCTGCCCGCTCCGCCAGCAACTGGATTTGGAGACGCGTTTCCTCCTGGGGGCTCAATCCACAAGCGCCAGGCCACAGCAGGTTCCCTTTAATCCGCCGGGAGGGCCGCCTGCTTTGTTGGGGGGAGTCGGTAGTGGAGAGTGGACGTCCCGGTGCTGGAGAGCTGGCGGCCGGGCGCACGGCTGATGCCCGGGTGGCAGCGGCGGCTGTGGCGACTCTTTGTTCCCGATTCCCGCTGGGCGGTGCGGGGTCGGGGTCGCGGTCGGTTTGGGCTCAGATGCCCCAACTTCAACACAAAGCCAGATGAGCGCGACTGCAGCTCGGCGATACCCGGGATTGCTCGACGCCCACGGTGCCGTGCCAGTTGCGCGCACACACGCAATACTTTAGTTTTGTTCTCAGTCCAGGTCGGAAGGGATCGAGGCGGGTCCAGTCGATGTATGTGCGCGATAgtgatttaaatcaatattgCTAGGACGATTCTTCTTTATTTTGGCACCGATGTAATCCTTGCACCCGTTTcccttttcctccctctctctctagcaCATTTCAGCCCAGACGCGCTCCGTCCGTCCGCCTGCCTGACTGCGCCGCCGAGTCTGATGGAAACTAATTCAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34831 True 799 lncRNA 0.60 2 39455040 39455858

Neighbor

gene id symbol gene type direction distance location
AMCG00008000 pnp4a,LOC107727769,LOC107727193,LOC107655042,LOC107685744,LOC107559547,LOC103041505,LOC108411380 coding downstream 148261 39300644 ~ 39306779 (-)
AMCG00007999 rem1,gem,LOC108411381,LOC107727768,LOC107655086,LOC107727184,LOC107554936 coding downstream 165042 39269967 ~ 39289998 (-)
AMCG00007996 rbm39,LOC106565016,LOC105017458 coding downstream 196810 39240447 ~ 39258230 (-)
AMCG00007995 nfs1,LOC107601922,LOC107559867 coding downstream 218558 39221082 ~ 39236482 (-)
AMCG00007997 NA coding downstream 241685 39206307 ~ 39213355 (-)
AMCG00008006 LOC106565397,LOC106583327 coding upstream 9713 39465571 ~ 39472392 (-)
AMCG00008015 tbc1d20 coding upstream 26728 39482586 ~ 39489763 (-)
AMCG00008018 ube2c,LOC107744406 coding upstream 57608 39513466 ~ 39517267 (-)
AMCG00008017 LOC107744395,LOC107587627 coding upstream 62586 39518444 ~ 39525326 (-)
AMCG00008014 pcif1 coding upstream 72531 39528389 ~ 39541946 (-)
G27686 NA non-coding downstream 532352 38920970 ~ 38922688 (-)
G27668 NA non-coding downstream 599263 38855548 ~ 38855777 (-)
G27661 NA non-coding downstream 675288 38776161 ~ 38779752 (-)
G27639 NA non-coding downstream 687472 38749127 ~ 38767568 (-)
G27626 NA non-coding downstream 742703 38710852 ~ 38712337 (-)
G27904 NA non-coding upstream 308072 39763930 ~ 39764417 (-)
G27927 NA non-coding upstream 334688 39790546 ~ 39791484 (-)
G27949 NA non-coding upstream 386473 39842331 ~ 39847044 (-)
G28036 NA non-coding upstream 821305 40277163 ~ 40277647 (-)
G28095 NA non-coding upstream 1171919 40627777 ~ 40632764 (-)
AMCG00007993 dynlrb1,LOC106565026 other downstream 363145 39088557 ~ 39091895 (-)
G27720 NA other downstream 399361 39054153 ~ 39055679 (-)
AMCG00007990 ppp1r16b,LOC106566117,LOC107558141 other downstream 405443 39032787 ~ 39049597 (-)
AMCG00007983 NA other downstream 517377 38924581 ~ 38937663 (-)
AMCG00007984 NA other downstream 547229 38904758 ~ 38907811 (-)
G27861 LOC797048,LOC108410937,LOC107740256,LOC105897858 other upstream 44463 39500321 ~ 39504592 (-)
AMCG00008042 NA other upstream 812414 40268272 ~ 40288574 (-)
G28202 NA other upstream 1560301 41016159 ~ 41017248 (-)
AMCG00008069 rps21 other upstream 1743631 41199489 ~ 41201825 (-)
AMCG00008076 NA other upstream 1949933 41405791 ~ 41412224 (-)

Expression


Co-expression Network