G27847 (LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675)


Basic Information

Item Value
gene id G27847
gene name LOC108410937,LOC797048,LOC107560508,LOC107740256,LOC106583675
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39503079 ~ 39504377 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU34851
AGTCGCACAGCTCCTCGGACTGCCTGGTCATCACCATCATGGAGATGCCGGGCGACACCCCGTCCTCCTCAGAGACCATGAGCATGCTGAACATGGTGCGTCTGTACCGGCCGCCCAGCCTGGACTCGCTGCCCTGCCACCTGCCCATGCAGAAGTGCAGGGCCTGGACCTCGCGCACCTTCCCTCGCTTCCTCATCGGCGTGCTCTGCCTCATCTACTTCAGCTCCCTGCCGCTGGGCATCTACCTGCTGATGATCCAGCACCTCACGCTGGGCGTCATCCTGGTCAGCCTGGTGCCCTCCACCCTCGTCCTGTGCGTCTTCTACGGCTTCTGCCAGTGCCTGTGCCACGAGATCATGGAATCCATCGCCACATGACCCCGGGGGGAAGGAGGCAGGAGTGTGGGAGGGGTGGTGGGTGAGGTTTGGGGTTCTCCTGCAGTAGACCCAACTAGACTGGACTAGTGGGAAAATCCAGCAGCCAGTGCATCGTCAACCCCTTACGTCGGCCTTGCTTTGTCCCCCGGGGCCGATTCTCTCCACGCGCCGGCAGCTCCAGTAACCCCACCTCTCCTCTGTTTCCcatcctctgcctcctcccccTGTTGTTTTGCTGCCCCCGGCCGGACACAGATCTGGAACTTTAGCGGAGTGAGGCGAGCCGAACCATACCCGGCCGTGCCCTGCCGTTGCCAAGCTGTGGTGGCATGTGCTGCGTCCGGGCCTGGGGCCTCTTAGAGCCCACCACAGAACCACAGCTGCGCTCACTGTGCATGCAGACAGCTCCAAGGTTGCTATCAGGAGCTTCCCCCTGCAACGGGGACACGGCTCCCCATTGTCATCCAGTCCAGTGTGGAGAAAAGCGACGGCTGGGGTGTGATTGGCGTGTGCTTATCTCTGGAAAAAGTCCTTAAATACAAAGGTGAATTAAGAAATTCAAAATGAATCAAGATTTTGTAGTATTCCGTTCTCAGACCAAAAAGGGCCTAAATCCCCATCATGATCATTCAGCTGTGATGTTAGATAATACTATGAAATTATCCATCTTGCCTTCTGCCACGTAAAACTGCATACATGGGGTGCAGAGCTCTGGGTGGAATTGGAAGAGTGGCTTAATATCAACCCAGCGGGCACACAGCGTCCGTCTGCACATCTGTACATGTATGGTGTTAATGTACTTTCTGGAGGTTTAAATCTGTCGGCATGTCTGCACCATGGTTTTGAGCAGAACAGCAACGTCTGCCTTTCTCTTTGCTGAGCAAGACTAGAGTGACACCCAGAACCGCCAAACTGTTATCAA

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF182-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34851 True 1299 TUCP 0.56 1 39503079 39504377

Neighbor

gene id symbol gene type direction distance location
AMCG00008008 LOC107696440,LOC107587593,LOC105897858,LOC797048,LOC107740256,LOC107666076 coding upstream 60 39494845 ~ 39503019 (+)
AMCG00008002 NA coding upstream 20746 39472816 ~ 39482333 (+)
AMCG00008003 NA coding upstream 39777 39456663 ~ 39463302 (+)
AMCG00008005 NA coding upstream 47505 39446070 ~ 39455574 (+)
AMCG00008004 NA coding upstream 89304 39411690 ~ 39413775 (+)
AMCG00008013 NA coding downstream 5082 39509459 ~ 39511872 (+)
AMCG00008012 NA coding downstream 7896 39512273 ~ 39512791 (+)
AMCG00008009 NA coding downstream 45699 39550076 ~ 39555822 (+)
AMCG00008011 NA coding downstream 64066 39568443 ~ 39570932 (+)
AMCG00008022 NA coding downstream 280447 39784824 ~ 39790664 (+)
G27788 NA non-coding upstream 211858 39290968 ~ 39291221 (+)
G27781 NA non-coding upstream 236406 39266422 ~ 39266673 (+)
G27760 LOC105912234,LOC101475128,LOC102305233,LOC102193169,LOC107093176,LOC103134693 non-coding upstream 294786 39206381 ~ 39208293 (+)
G27709 NA non-coding upstream 443345 39059531 ~ 39059734 (+)
G27708 NA non-coding upstream 447452 39054539 ~ 39055627 (+)
G27881 slc12a5b,LOC107725712,LOC107550951,LOC107747216,LOC107683884 non-coding downstream 100235 39604612 ~ 39604828 (+)
G27960 NA non-coding downstream 453610 39957987 ~ 40003700 (+)
G27973 NA non-coding downstream 547513 40051890 ~ 40060205 (+)
G28032 NA non-coding downstream 773037 40277414 ~ 40277687 (+)
G28140 NA non-coding downstream 1247098 40751475 ~ 40755976 (+)
AMCG00007970 rab22a,LOC107596793 other upstream 794164 38692739 ~ 38708915 (+)
G27551 NA other upstream 1066484 38432045 ~ 38436595 (+)
AMCG00007957 raly other upstream 1079924 38355929 ~ 38423155 (+)
AMCG00007952 romo1,LOC102788570 other upstream 1332933 38168570 ~ 38170146 (+)
G27518 NA other upstream 1356229 38144984 ~ 38146850 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other downstream 6034 39510411 ~ 39592411 (+)
AMCG00008010 NA other downstream 35843 39540220 ~ 39545607 (+)
AMCG00008020 NA other downstream 312650 39817027 ~ 39834952 (+)
G27974 NA other downstream 552255 40056632 ~ 40059386 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other downstream 736935 40241312 ~ 40247238 (+)

Expression


Co-expression Network