Gene
RNA
| Item | Value |
|---|---|
| gene id | G27949 |
| gene name | NA |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030123.1 |
| NCBI id | CM030123.1 |
| chromosome length | 53548854 |
| location | 39842331 ~ 39847044 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0031231 | intrinsic component of peroxisomal membrane | cellular_component |
| GO:0005777 | peroxisome | cellular_component |
| GO:0005778 | peroxisomal membrane | cellular_component |
| GO:0005779 | integral component of peroxisomal membrane | cellular_component |
| GO:0044438 | obsolete microbody part | cellular_component |
| GO:0044439 | obsolete peroxisomal part | cellular_component |
| GO:0031903 | microbody membrane | cellular_component |
| GO:0042579 | microbody | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU34987 | True | 261 | lncRNA | 0.61 | 2 | 39842331 | 39847044 |
| TU34988 | False | 261 | lncRNA | 0.61 | 2 | 39842331 | 39847044 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00008019 | NA | coding | downstream | 214229 | 39592332 ~ 39628102 (-) |
| AMCG00008016 | NA | coding | downstream | 275777 | 39557576 ~ 39566554 (-) |
| AMCG00008014 | pcif1 | coding | downstream | 300385 | 39528389 ~ 39541946 (-) |
| AMCG00008017 | LOC107744395,LOC107587627 | coding | downstream | 317005 | 39518444 ~ 39525326 (-) |
| AMCG00008018 | ube2c,LOC107744406 | coding | downstream | 325064 | 39513466 ~ 39517267 (-) |
| AMCG00008025 | tfap2c,LOC106565286 | coding | upstream | 82487 | 39929531 ~ 39945352 (-) |
| AMCG00008026 | rtfdc1,LOC106565284 | coding | upstream | 134568 | 39981612 ~ 39984433 (-) |
| AMCG00008029 | LOC106565282 | coding | upstream | 139884 | 39986928 ~ 40008602 (-) |
| AMCG00008028 | LOC108233014,LOC100703573,LOC101171829 | coding | upstream | 203985 | 40051029 ~ 40061973 (-) |
| AMCG00008032 | NA | coding | upstream | 230464 | 40077508 ~ 40091201 (-) |
| G27927 | NA | non-coding | downstream | 50847 | 39790546 ~ 39791484 (-) |
| G27904 | NA | non-coding | downstream | 77914 | 39763930 ~ 39764417 (-) |
| G27833 | NA | non-coding | downstream | 386473 | 39455040 ~ 39455858 (-) |
| G27686 | NA | non-coding | downstream | 919643 | 38920970 ~ 38922688 (-) |
| G27668 | NA | non-coding | downstream | 986554 | 38855548 ~ 38855777 (-) |
| G28036 | NA | non-coding | upstream | 430119 | 40277163 ~ 40277647 (-) |
| G28095 | NA | non-coding | upstream | 780733 | 40627777 ~ 40632764 (-) |
| G28110 | NA | non-coding | upstream | 812837 | 40659881 ~ 40663760 (-) |
| G28119 | NA | non-coding | upstream | 816873 | 40663917 ~ 40667862 (-) |
| G28139 | NA | non-coding | upstream | 901262 | 40748306 ~ 40750443 (-) |
| G27861 | LOC797048,LOC108410937,LOC107740256,LOC105897858 | other | downstream | 337739 | 39500321 ~ 39504592 (-) |
| AMCG00007993 | dynlrb1,LOC106565026 | other | downstream | 750436 | 39088557 ~ 39091895 (-) |
| G27720 | NA | other | downstream | 786652 | 39054153 ~ 39055679 (-) |
| AMCG00007990 | ppp1r16b,LOC106566117,LOC107558141 | other | downstream | 792734 | 39032787 ~ 39049597 (-) |
| AMCG00007983 | NA | other | downstream | 904668 | 38924581 ~ 38937663 (-) |
| AMCG00008042 | NA | other | upstream | 421228 | 40268272 ~ 40288574 (-) |
| G28202 | NA | other | upstream | 1169115 | 41016159 ~ 41017248 (-) |
| AMCG00008069 | rps21 | other | upstream | 1352445 | 41199489 ~ 41201825 (-) |
| AMCG00008076 | NA | other | upstream | 1558747 | 41405791 ~ 41412224 (-) |
| AMCG00008085 | NA | other | upstream | 1999889 | 41846933 ~ 41849954 (-) |
