G28140


Basic Information

Item Value
gene id G28140
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40751475 ~ 40755976 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU35229
ACAAGAACATAAAGCTTTCCCCCGTGGAGACGAGCTACTGCAGTGGGGTATCGAGTACCTCGAGGTCGCTGTCTTGCTGTGACCCATTAAAAACGGTTTTGGCACAAGGCAGAGCTAGACGAGGGCTCAGAGGCTCCCATTCACAAGGATTTCTCGGTTCCAAGCTTTTACTTTCTTGATGCCATGCATATGCttttaacctgtgtgtgtgtgtgtttccttcaGCAGGCAAACGCTAATCTCAATTCATTTTGATCGTTACTTTGTCAGAGGAGCACTTACGCGGCTCTGACTGACAGTCTGAGAAAGGAACAAGGCTGCAGCTGCTTGTCAAGAAGGTGATTTGCAGACTAGGAAAGTAAGTGGTCCTAATGGCCCGGgcaatgtgattttaaaaagaaagtactTCAGACAGAGCAGGCTGGTTCAACCAACTTGAAGGGGTGAACTTGTATCAGCCAGTACTAGTTGAGTACTAGTGCTGATCTCCTTCGTACTGCAAAACACTGCAAGAAATCCATTGCAGTTCACTGCAGGCTGAAATTTCAGCCATTGATACAGACTGATAACCtacatatttattgtgaaacatgAAACCTACATCCTGGTGCTGGTGCTGTTATGCTGCCAGACAGGTGCAGGTTAAATGTAGTGGGTGGAGAGGGAGGAAATGAAGTCATTATTGCTACTGGTGGATACTGCAAACCTTTTATTAAGGGTCACACAAGTggatttaaaatctgttttaatttaaacgAGGCTGGATATTTAAGTACTAGAGCCAGGCAGTCATTAGTTCACTTGTTtcctcagtgtgtctgtgggtccCAATGAGCCGAGCCGAGCCCTGCGCTGTCTGCTGATCAACGCGCTCTCAATACGTCGCTGCAGAGCCTTCCGGCCGGAGGAAAGCATCAGATCAGAGGTAACCTGCATCCTGAGACCAGAGCAGAAACAAAGACAGCTTTCCAAAAGTATGGCTATTTATCAGGCTTCTCAAGGCGGTTTTCACCTTGGCAAATTCACGGCTAAGAGAAAcggaaaataatgacattttgtgtattttctatttttgttttgtttagttccGTCAATGCAACAGGATAATGCACCTGCAGGGGTAGAGATGGATCTTGTCATCTTGCAGGTTCAACCGCTTTAAGACAGTCTGTTACAAATGCTAAATCACAAAGGTGTAGCGCGACACAATCGTCCGTACATATTCTACACTGGGACGTTCCTGGGTTTATCCATTACGTTTCCCGCCAGCCTTCGTTTCACCCACTCATAGAGTGGGAATAGAGGTTTTCTTTCAAAGGaaacttaatattttttcattcaggTTTACATTATTGGaaatccagatttttttttatattaacaaaaaatgtgaGGTGATGGGGTTTAGGGCCACATTAGTAACCATTACCTGTGTACATCCCTCAATGCATCTCTGTGCTCCAGTTCCCTTTCAGTGAGTTTCTTGTATTGCTGATGTTCACTTACATggcaaaaaagcaaacacaaccaaaaaaaaaacaaccaccctACACCACTGACATTTGATGCATTCGTATATGGGGACGCCACATTATTCTCCAGCTGTGATCGAGGAGCTGGCTTTCATCGACATTATGGAAGCAGGTCATGCACTGAAGTCAACACAGACATCTGCCCCTCTCTCCTGAggttcaaggaaaaaaaaacgtattggGCTTCTTTCGCTCTGCAACGGCAAATTCCAAAAATGGCTTTTAATTCAAGCTAGGACGTTTTTCCCCAATAAAAGCTTCTGTGATTTTCAGGCAGCCGACATCATTAACACCACAGCCTCCCGTACTGTAAATGACCAGGAATGTTATGATTATCAATTGCATTGCAGTACTCGACTTATATATTTCACCAGTGCAAACATCAGCCTTGAAACAGGCCCTGGTATTGAAGACACgtttttatacacacatatataaatatctttTTCTTTGTGAACTAAAGCACAGGCTTGCTTTGTCAATGTGCAAAAGGGAGCAtaacagtgacacaaaacagcctGTGAAGCCTGCCTCTAGTCAGAACTCCTGATGctaaatattttgttcttcGCCAGTGGTAATAAATTACACCCACTGATTCTCGCCAAGGTCCAGCTTTACTGAAGGGGGATTATACCGTGTAGGGGGAGAAAGCAGCCCGATACTGTACTTGAGAGACTAGCAAACCGTGCCAGGCAAACAGATACAAAACCCACTGAGCTGGGCAGTGAAAGGAGGACGCCCATTTGGCACGGCCTGGTATTGCACCTGCAAACAATGGAATGGGTCATGAGTGTGTCTCGGTTATGGCGATAATCGTGAATCCTGCAGTGGGGGGAGAGTCCGGGCAGCAGCGCCGCATCCCTGACCACGGGACGCCACGGTGCTGGGGAACCCACCGGCGCCAGAGAGGTTTGACTTCaagttaacaaaaataaatcgcAAAATCtccagggggagggggggacgACAACCACAGTGCAAAAGCAGTGAACGAAGAAACAAAACGAccggatttttttttttttttttttttttgcgaagACAGAAGAGCATTGTCGCTGAGGTCCTCTTGTTGTGCAGGAGGCTGTAGTCTTGGGTTGAGGTTACAACAGGTCTGTGGCAAATATCAGGTCCATAGCAGCAAATGGGTTAATGGCCATCTTAgaacaagacaaagaaaatcTTCCCCGAATGTCCAGCACTGAACTGAGTTAACTACAAGAGAGGTTTTCACGAGGAAAAGAGGAACCTGGACCCCTTGATTCATATGTATAAGCACATGTTTACATATTCTGTACAGAGGTGGCAGTGTGTACCCCTACCCGCATAGCAGTGGCATTGCCCTTTAATCCAGAGTTTAGGTGACTGGTTTGAGTTATACCTGTCTAGTATGGAAGCCATGCTGTCAGTGAGAGATACCGCAAATATCATCCAGGGGAGCCTAAAAACGCTCGACTGTGGCAAGTAGGTCCTTTTAGATACATtcctgaataataaaaaaatctaatcagaGGCCATTCTTCAGCCCTTCAACTGCATTTACAATTGCATGTATAAACAACAAAACTCGCCTTTCAATCACAAttgaagaaataatatatatgaatatatttttaaataaatgcttggcgttttagaaaaaacaacatcctcTAGAAACTGCTTGTAAGAGCTAGACTTTAGTGACATCATTTAAACCTCATTTTCGATTTTGTTTCGCCAATCCTCAATCCAGTTTTATCCACATTGCTCGGATATCCATGGATTCAAACTAAAActggtatataaatatatttgaggTATTTCCGTGTGAAAGAATGGCCTTCCATATGCATAAGTACTGTGGTTCCTTAAAGGAAAGTCTTTATTACTCAATGGGGAATGTGAGGTCTGTATGAGGGGAAAGTGCTTAAAAATACACAGAGCGCATATTTACAGCTATTTGCAAGTTTTCATTCTTCTCCATCTCCTTAGCCTCTGTTCAAAGTGTCTTCAATAGTTAGTGCTATCTTTAAGATAAGTCACACCATTCGGTAGATCAGGAAAAACTGCTAAACTGGAATtgataaaaaaagatttgtcCTCAAAGAAAGTGTTTAGTTGGTGTTATGGGGGTTTGTGTCTTTGGGGCATTTGGTTGAAATTTAGAAGGTTGACTTCCACTGTGTACAAACATGGTGGCCTCTATAGCACCAAGAGACCCCCCCAAAGACACCAGACGGCAGATAAACGACAGCTGTATTCAATAAGACAACGCTGCTTCTGTCGAATACCAGCCGTCCACTGAAAAAGTGTCCTTCACCAATTGTGAAACTCCAAACTAGTTAGTTTCTGAGCAAAAATTACTGTCCCTCAGGAAACAGTTAAGAAATGCTCCTTAGGTAGATTAATCTCAGCTCGTTTTAGAGTAATGGGAGGAAAGCGTCCATCCTCCACTCACAGGCCAGCCTCCTCTCGCAGAAGGAGGGAGTGACGGCACAGGCTGTATGAAGCCGTgggtctctctccctctctctccctctctctccctctctctccctctctcgcgcTCCAGGCTCTCGGGGTGGGGTCCCAAAGCCACACAGAGGAAGAGGTGTCACCTCAactgagagagggggggtggtggtggtggggaagggggtggaggaggaggaggaggaggaggaggaggaggaagaggaagaagggAGGGGTCCAGTGTAAATTGATATCTGGGTCTTTACTCCAGGGACAGAGGAGGGAGATGGGGCTCAATTCTGCTGTAAGATCAGGTTTTCCAGTTCGTCGGCGGAGCGCAGCAAGAAGGCGGCGGACTCCCGGTACCCTGCGATCAGCTGCCGCACCGCGTTGATCTCCGTGGGGCTGAGCTGGGCTGTGGGGACGCCCCGGCTGTTTgtgctggaggaagaggagttcGAGGCCACGGACTTCATGCTGAGGTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35229 True 4479 lncRNA 0.45 2 40751475 40755976

Neighbor

gene id symbol gene type direction distance location
AMCG00008050 LOC106566823,LOC107586510,LOC107701716,LOC107756373,LOC107570968 coding upstream 6210 40724357 ~ 40745265 (+)
AMCG00008049 LOC107707748,LOC107747492 coding upstream 41626 40698024 ~ 40709849 (+)
AMCG00008046 tm9sf4,LOC107690854,LOC107681873 coding upstream 90429 40649143 ~ 40661046 (+)
AMCG00008048 LOC107747493 coding upstream 104309 40632644 ~ 40647166 (+)
AMCG00008045 NA coding upstream 127204 40608612 ~ 40624271 (+)
AMCG00008057 NA coding downstream 140640 40896616 ~ 40922814 (+)
AMCG00008061 NA coding downstream 174136 40930112 ~ 40948904 (+)
AMCG00008062 mapre1,LOC100304488,LOC108429292,LOC107681395,LOC107551545,LOC107666429 coding downstream 194236 40950212 ~ 40959551 (+)
AMCG00008059 NA coding downstream 207173 40963149 ~ 40975884 (+)
AMCG00008060 NA coding downstream 237745 40993721 ~ 41013873 (+)
G28032 NA non-coding upstream 473788 40277414 ~ 40277687 (+)
G27973 NA non-coding upstream 691270 40051890 ~ 40060205 (+)
G27960 NA non-coding upstream 747775 39957987 ~ 40003700 (+)
G27881 slc12a5b,LOC107725712,LOC107550951,LOC107747216,LOC107683884 non-coding upstream 1146647 39604612 ~ 39604828 (+)
G27788 NA non-coding upstream 1460254 39290968 ~ 39291221 (+)
G28141 NA non-coding downstream 2722 40758698 ~ 40759010 (+)
G28143 NA non-coding downstream 5290 40761266 ~ 40761633 (+)
G28174 NA non-coding downstream 221678 40977654 ~ 40978428 (+)
G28173 NA non-coding downstream 260391 41016367 ~ 41017248 (+)
G28178 NA non-coding downstream 262268 41018244 ~ 41019386 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other upstream 29730 40663972 ~ 40721745 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other upstream 504237 40241312 ~ 40247238 (+)
G27974 NA other upstream 692089 40056632 ~ 40059386 (+)
AMCG00008020 NA other upstream 916523 39817027 ~ 39834952 (+)
AMCG00008007 ncoa5,LOC107666089,LOC107740257 other upstream 1159064 39510411 ~ 39592411 (+)
G28395 NA other downstream 1236883 41992859 ~ 41993377 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other downstream 1657656 42413632 ~ 42437228 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 2349737 43105713 ~ 43108242 (+)
AMCG00008120 NA other downstream 2388829 43144805 ~ 43156072 (+)
AMCG00008132 NA other downstream 2536620 43292596 ~ 43305530 (+)

Expression


Co-expression Network