G28173



Basic Information


Item Value
gene id G28173
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41016367 ~ 41017248 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU35273
attcctctaggtacacttgcacacagtgtttgaaggaactcggcaggttggttgacccaaacatcttggagaactaaccacggttcttctgtggatttaggcagcctcagttgcttccctaatcccagacagacttgatgatgttgagatcagggctctgtgggggccataccatcacttccagcactccttgttcttctttacactgaagatgaCTTTTTAATGACTGTTGACtgttggggtcgttgtcatgctgcagaataaatttggggccaatcagatgactccctgatggtattgcatgatggataagtatctgcttgtacttctcagcattgaggagaccattaattctgaccaaatccccaactccatttgcagaaatgcagccccaaacttgcaaggaacctccaccatgcttcactgttgcctgcagacactcattcatgtaccgctctccagcccttcagtgaataaactgccttctgctacagccagatagtTCACATTTTGACtaatcagtccagagcacctgctgccatttttcagCACCCCAgctcctgtgttttcatgcatagttgagtggcttggccttgttgccacgtcggaggtatggctttttgcccgcaagtcttccatgaaggccgcttctgaccagacttctccggacagtagatggtgtaccagggtcccactgttttctgccaattctgagttgatggcactgctggacatcttccgattgcgaagggaagtgagcatgatgtgtctttcatctgctgcagtaagtttcgttggccgaccactgcgtctatggtcctcgacactgcccgtttctttgtgcttcttcagaagagcttggacagcacatctggaaNNNNN

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU35273 True 882 lncRNA 0.48 1 41016367 41017248

Neighbor


gene id symbol gene type direction distance location
AMCG00008060 NA coding upstream 2494 40993721 ~ 41013873 (+)
AMCG00008059 NA coding upstream 40483 40963149 ~ 40975884 (+)
AMCG00008062 mapre1,LOC100304488,LOC108429292,LOC107681395,LOC107551545,LOC107666429 coding upstream 56816 40950212 ~ 40959551 (+)
AMCG00008061 NA coding upstream 67463 40930112 ~ 40948904 (+)
AMCG00008057 NA coding upstream 93553 40896616 ~ 40922814 (+)
AMCG00008064 osbpl2b,LOC107727008,LOC107666451,LOC107681391,LOC107705692 coding downstream 93808 41111056 ~ 41118960 (+)
AMCG00008065 adrm1,LOC103354471,LOC107727009,LOC105894265 coding downstream 106655 41123903 ~ 41128874 (+)
AMCG00008070 NA coding downstream 333180 41350428 ~ 41356833 (+)
AMCG00008077 oprl1,LOC106572940,LOC107681404 coding downstream 541172 41558420 ~ 41563189 (+)
AMCG00008081 LOC108440949,LOC107690850 coding downstream 752702 41769950 ~ 41789678 (+)
G28174 NA non-coding upstream 37939 40977654 ~ 40978428 (+)
G28143 NA non-coding upstream 254734 40761266 ~ 40761633 (+)
G28141 NA non-coding upstream 257357 40758698 ~ 40759010 (+)
G28140 NA non-coding upstream 260391 40751475 ~ 40755976 (+)
G28032 NA non-coding upstream 738680 40277414 ~ 40277687 (+)
G28178 NA non-coding downstream 996 41018244 ~ 41019386 (+)
G28234 NA non-coding downstream 111888 41129136 ~ 41129628 (+)
G28263 NA non-coding downstream 182205 41199453 ~ 41201854 (+)
G28298 NA non-coding downstream 347347 41364595 ~ 41366619 (+)
G28299 NA non-coding downstream 349478 41366726 ~ 41368640 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other upstream 294622 40663972 ~ 40721745 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other upstream 769129 40241312 ~ 40247238 (+)
G27974 NA other upstream 956981 40056632 ~ 40059386 (+)
AMCG00008020 NA other upstream 1181415 39817027 ~ 39834952 (+)
AMCG00008010 NA other upstream 1470760 39540220 ~ 39545607 (+)
G28395 NA other downstream 975611 41992859 ~ 41993377 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other downstream 1396384 42413632 ~ 42437228 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 2088465 43105713 ~ 43108242 (+)
AMCG00008120 NA other downstream 2127557 43144805 ~ 43156072 (+)
AMCG00008132 NA other downstream 2275348 43292596 ~ 43305530 (+)

Expression



Co-expression Network