G28174


Basic Information

Item Value
gene id G28174
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40977654 ~ 40978428 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU35274
CATTGAGCTGATTCATATATTCAACATGAATCATACAATTTTGCATCGAGTGGCTACATATGTACGGTGTTAAAGTAAGAACAAGATATGGTTTTGGAGTtactaataaaatgttaaatatacatcatgacacaaatatattttgcctGTGTATTTGTGTCCTTATTAGTACTACTTTTAGTGTAGCTGGCTACTGTTTCTAATTATATAACACTTGAGTACTCAATACTGAAAAGTGCACCATTATACCTGCGTGTTGCTGTGTTGATACAGCTGAATGCTGCACTTCAGGTAAATTATGGAAATCCTGCGTTTAAAGGCGGCATTGGACCCTGTATTCATACACAATGCAGTCGTGCTTTCTGAGTTTAGTCACACATATTACCTGAAGTGCTTGTCCAGTGTAAATGCCCCGTCGTATTCAGTGCAGCTGCgtacatattacatatacagtAGATGCAATGCAATACCCCAAGTCCTGGATCTGTGTGAATTTCCCAGTTATTCATTAAAGCATctctgtccttcctgtctgtgaGAGTAAAACTAGATTGTGTCTAATAGATCTGAAATAGTTTGCACTAATAGTAAATGTGTCATATATTTAACCGTGTTCATAGCACTGAAACTTGCATTTACATACAGGCTGCGGTACAGAGGACAGGAGTGACAGAAATGCTTTATTCAATGACCTGGTCTGCTCAGATAGAACAAGTACTTCTGGGGtaatgtgtgtacatataccGATTTATGCAAAATTGTATGATTCATGTTG

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis
ko04927 Cortisol synthesis and secretion

RNA

RNA id representative length rna type GC content exon number start site end site
TU35274 True 775 lncRNA 0.37 1 40977654 40978428

Neighbor

gene id symbol gene type direction distance location
AMCG00008059 NA coding upstream 1770 40963149 ~ 40975884 (+)
AMCG00008062 mapre1,LOC100304488,LOC108429292,LOC107681395,LOC107551545,LOC107666429 coding upstream 18103 40950212 ~ 40959551 (+)
AMCG00008061 NA coding upstream 28750 40930112 ~ 40948904 (+)
AMCG00008057 NA coding upstream 54840 40896616 ~ 40922814 (+)
AMCG00008050 LOC106566823,LOC107586510,LOC107701716,LOC107756373,LOC107570968 coding upstream 232389 40724357 ~ 40745265 (+)
AMCG00008060 NA coding downstream 15293 40993721 ~ 41013873 (+)
AMCG00008064 osbpl2b,LOC107727008,LOC107666451,LOC107681391,LOC107705692 coding downstream 132628 41111056 ~ 41118960 (+)
AMCG00008065 adrm1,LOC103354471,LOC107727009,LOC105894265 coding downstream 145475 41123903 ~ 41128874 (+)
AMCG00008070 NA coding downstream 372000 41350428 ~ 41356833 (+)
AMCG00008077 oprl1,LOC106572940,LOC107681404 coding downstream 579992 41558420 ~ 41563189 (+)
G28143 NA non-coding upstream 216021 40761266 ~ 40761633 (+)
G28141 NA non-coding upstream 218644 40758698 ~ 40759010 (+)
G28140 NA non-coding upstream 221678 40751475 ~ 40755976 (+)
G28032 NA non-coding upstream 699967 40277414 ~ 40277687 (+)
G27973 NA non-coding upstream 917449 40051890 ~ 40060205 (+)
G28173 NA non-coding downstream 37939 41016367 ~ 41017248 (+)
G28178 NA non-coding downstream 39816 41018244 ~ 41019386 (+)
G28234 NA non-coding downstream 150708 41129136 ~ 41129628 (+)
G28263 NA non-coding downstream 221025 41199453 ~ 41201854 (+)
G28298 NA non-coding downstream 386167 41364595 ~ 41366619 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other upstream 255909 40663972 ~ 40721745 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other upstream 730416 40241312 ~ 40247238 (+)
G27974 NA other upstream 918268 40056632 ~ 40059386 (+)
AMCG00008020 NA other upstream 1142702 39817027 ~ 39834952 (+)
AMCG00008010 NA other upstream 1432047 39540220 ~ 39545607 (+)
G28395 NA other downstream 1014431 41992859 ~ 41993377 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other downstream 1435204 42413632 ~ 42437228 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 2127285 43105713 ~ 43108242 (+)
AMCG00008120 NA other downstream 2166377 43144805 ~ 43156072 (+)
AMCG00008132 NA other downstream 2314168 43292596 ~ 43305530 (+)

Expression


Co-expression Network