G28178


Basic Information

Item Value
gene id G28178
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41018244 ~ 41019386 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU35282
tctgttcactcactttgcatttagtttattgataaatataatctattaacatgtaaagtaagaatgttttcaaaaatagacagcattttttcacacctgcctaagacttttgcacagtactgtatataatatgtgtgtgtgtgtgtgtgtgttagtgtttgcttggagatcatgtgacaatgctttgataaaagtaactatgtaaaTGAGctgctttttacttttacttgtaGCTATTTTttaccagtacttttacttttacttgagtaacATTTCATCAGTTACAGTACTTCTTcttgagtaggattttttagtactctttccacctctgtcAAAATGTCAGATTAACAGATCCTCGGTTTATATGCACTGTTGGTCGGAAGCCACAAGATGGAGCTCTTGGAGAAAGCATTTGAAGAAACTGGTGCCTTGACATATAAACTTGCATGTAAACATACAAgctttttataattaattttaaaattagcaCTTCCGAAACTGGTACGCAGAGGAGTGTTGGCTGTACTGGGACCCTGTGATTTggtgtattaatattattcttaaCCTCATCCCGTGGGGAATCTGAAATGTCATGTCTCatcatttcctttgttttcgtCATATTTTCCAGGATCAATATTTTGTGCTTATGCTACAGGAATGTCATCCTTTTTACTGCTTTTGCAAaatgttacttatttatttttgtatcgtGTTCATTCAGCTGAATTCTGTTTACACAGGAGCTCATAACATTGGGTCTGTGAGGGGTTAATCTGAAGCTGTAGTATTCTGGCTTGTTCAGTATGGTTGCTGCttgggggggtgtgtgtgggggggttattTTCCCAGAGTCTTTTGTCCAAGAAGCCCAATGGAATTGCAGCTGAGCGATGCATACACAAATCAATATCTTCAAAAGACTGCATCTCCAATAGAAATTCCTCTGTATACCCATCTCAGTTTCCCTGAATGCTTTTGcttgtcatatatatattttgtctttttcttttttcagcttCCTGTGTGCTTTTGTAAGATGTGCATTTATGTTTCAGGGGATTTAGAAATGAggtagcatttaaaataaaattggtgtgtatgttaaattatattgcatttatgtttttaacagcTATGGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35282 True 1143 lncRNA 0.36 1 41018244 41019386

Neighbor

gene id symbol gene type direction distance location
AMCG00008060 NA coding upstream 4371 40993721 ~ 41013873 (+)
AMCG00008059 NA coding upstream 42360 40963149 ~ 40975884 (+)
AMCG00008062 mapre1,LOC100304488,LOC108429292,LOC107681395,LOC107551545,LOC107666429 coding upstream 58693 40950212 ~ 40959551 (+)
AMCG00008061 NA coding upstream 69340 40930112 ~ 40948904 (+)
AMCG00008057 NA coding upstream 95430 40896616 ~ 40922814 (+)
AMCG00008064 osbpl2b,LOC107727008,LOC107666451,LOC107681391,LOC107705692 coding downstream 91670 41111056 ~ 41118960 (+)
AMCG00008065 adrm1,LOC103354471,LOC107727009,LOC105894265 coding downstream 104517 41123903 ~ 41128874 (+)
AMCG00008070 NA coding downstream 331042 41350428 ~ 41356833 (+)
AMCG00008077 oprl1,LOC106572940,LOC107681404 coding downstream 539034 41558420 ~ 41563189 (+)
AMCG00008081 LOC108440949,LOC107690850 coding downstream 750564 41769950 ~ 41789678 (+)
G28173 NA non-coding upstream 996 41016367 ~ 41017248 (+)
G28174 NA non-coding upstream 39816 40977654 ~ 40978428 (+)
G28143 NA non-coding upstream 256611 40761266 ~ 40761633 (+)
G28141 NA non-coding upstream 259234 40758698 ~ 40759010 (+)
G28140 NA non-coding upstream 262268 40751475 ~ 40755976 (+)
G28234 NA non-coding downstream 109750 41129136 ~ 41129628 (+)
G28263 NA non-coding downstream 180067 41199453 ~ 41201854 (+)
G28298 NA non-coding downstream 345209 41364595 ~ 41366619 (+)
G28299 NA non-coding downstream 347340 41366726 ~ 41368640 (+)
G28300 NA non-coding downstream 351480 41370866 ~ 41371821 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other upstream 296499 40663972 ~ 40721745 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other upstream 771006 40241312 ~ 40247238 (+)
G27974 NA other upstream 958858 40056632 ~ 40059386 (+)
AMCG00008020 NA other upstream 1183292 39817027 ~ 39834952 (+)
AMCG00008010 NA other upstream 1472637 39540220 ~ 39545607 (+)
G28395 NA other downstream 973473 41992859 ~ 41993377 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other downstream 1394246 42413632 ~ 42437228 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 2086327 43105713 ~ 43108242 (+)
AMCG00008120 NA other downstream 2125419 43144805 ~ 43156072 (+)
AMCG00008132 NA other downstream 2273210 43292596 ~ 43305530 (+)

Expression


Co-expression Network