G28190


Basic Information

Item Value
gene id G28190
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40983619 ~ 40984904 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU35294
ACGTACATCTCTCTTCTGATAAGGAAGTGACAACCAAGTTTCGCTTTAACAAAGAGGCAGTTATAAACATTCAATTCCGATAGAAAACCTGCAAGAATGATTGAGGACCACCATCTAACCATATTTGCCAACATGCttggagttacagtcttcctgCTCATTATTCTCTACCATTATGTGGTCACCAATGCCCCGAGAAAGCTGAAACACGGTCAATATTCTTAATGTTTTCTATGCAGGCACGTGGGGTCCAGAAGTCACTTTACTGACAAAGCTGCCAACTTGAAAGATGCCCATCTGatgaaaatgacacaaaataagTTATTCTCTGTACAAGACATGttgtatatcattatatataaaaataaataaactgtttc

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0005840 ribosome cellular_component

KEGG:

id description
ko03010 Ribosome
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
TU35294 True 380 lncRNA 0.38 3 40983619 40984904

Neighbor

gene id symbol gene type direction distance location
AMCG00008058 NA coding downstream 929 40981896 ~ 40982690 (-)
AMCG00008053 NA coding downstream 108182 40868653 ~ 40875437 (-)
AMCG00008056 NA coding downstream 134870 40847002 ~ 40848749 (-)
AMCG00008054 LOC105022343,LOC103467740,LOC106572463,LOC103385599,LOC106567217 coding downstream 155103 40819849 ~ 40828516 (-)
AMCG00008055 NA coding downstream 214295 40755783 ~ 40769324 (-)
AMCG00008063 NA coding upstream 71222 41056126 ~ 41078139 (-)
AMCG00008066 NA coding upstream 102044 41086948 ~ 41095005 (-)
AMCG00008068 lama5,LOC107666435 coding upstream 144012 41128916 ~ 41189631 (-)
AMCG00008067 NA coding upstream 218004 41202908 ~ 41219672 (-)
AMCG00008072 LOC106566342 coding upstream 235412 41220316 ~ 41229073 (-)
G28139 NA non-coding downstream 233176 40748306 ~ 40750443 (-)
G28119 NA non-coding downstream 315757 40663917 ~ 40667862 (-)
G28110 NA non-coding downstream 319859 40659881 ~ 40663760 (-)
G28095 NA non-coding downstream 350855 40627777 ~ 40632764 (-)
G28036 NA non-coding downstream 705972 40277163 ~ 40277647 (-)
G28203 NA non-coding upstream 33340 41018244 ~ 41019422 (-)
G28206 NA non-coding upstream 58792 41043696 ~ 41044047 (-)
G28241 NA non-coding upstream 144234 41129138 ~ 41129628 (-)
G28308 NA non-coding upstream 375240 41360144 ~ 41360468 (-)
G28309 NA non-coding upstream 379858 41364762 ~ 41366616 (-)
AMCG00008042 NA other downstream 695045 40268272 ~ 40288574 (-)
G27861 LOC797048,LOC108410937,LOC107740256,LOC105897858 other downstream 1479027 39500321 ~ 39504592 (-)
AMCG00007993 dynlrb1,LOC106565026 other downstream 1891724 39088557 ~ 39091895 (-)
G27720 NA other downstream 1927940 39054153 ~ 39055679 (-)
AMCG00007990 ppp1r16b,LOC106566117,LOC107558141 other downstream 1934022 39032787 ~ 39049597 (-)
G28202 NA other upstream 31255 41016159 ~ 41017248 (-)
AMCG00008069 rps21 other upstream 214585 41199489 ~ 41201825 (-)
AMCG00008076 NA other upstream 420887 41405791 ~ 41412224 (-)
AMCG00008085 NA other upstream 862029 41846933 ~ 41849954 (-)
AMCG00008095 NA other upstream 1098570 42083474 ~ 42089493 (-)

Expression


Co-expression Network