G28299


Basic Information

Item Value
gene id G28299
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41366726 ~ 41368640 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU35425
ACTTCAATCAAGTCCTGTAATTGCACACCCGAAGCATTTGTTACTCTAGAAGAATAGCATTTGAGATTTAAACTTATTCAATTTGcgctttagattttttttatacatatataaatatgtatatcatttcaaaaatgtaaaggaaCAATGCATCTTAAAATGCTTAGGAATGACCATTTTGCAACATAAGTTGCAACAGAATTTCCTCAGCAATCGAAGTGAACATacattcctttatttatttcatttccttCCTGTCTTTGAGTTGGGGATGTGCTCTGTGAAACGGTGTAGCTTTTCCTTTCTGTattgttaaaacaaatgctgccaTTTCAATCAACCAAACATTCAGAATTTTTAGatccaaattaaattattatatccattataatattatatccATCAAATCCAATACTCTCTCTACCTATCTAttaatagatagatatatttcAGAGGAAACCTTTTGAGATTTTCTCCTATTTAGAAAAAGAGCTGTAGAGACGATTTGCAGATCTCAGCCACTTTGCTTCACAGGGCAATAAGCATCACTCGGGAACAGAAATATAAagctattctttttttttttctctgaagaagcaactttataaatatttttataaaagtcTAGCTTGGTATAATCTCAGTGATTTAGTCTGATAAGAAGGTTTTTTTATTTGGCAAACCAATTGTCTAAGGTGAAGTCTAGGACAATATTACACTAttttgttggaaaaaaaaaagttaaatcttAATAAATGGCACTGAAACTACACAAGTAGTACAGAAGTTGGCAGAATATATTAATATCTTCTAGTACATTTAGAATGGCATAAAGTAACCAAAGGTGTCTTCTTAGGTATTGAACAACAATCACAAAAGGTGGGATCACTACTGAGAAAATACATCAGTCCCCCCTTTGTACACAGTACAATAAAGGTACAAGCTGTAGAATGAGGAACTACACTGCGATCAGTATAAAAGATTCAGAAAATGcatgacagaaaaacaaaagaatctGAGACTATTTGGTAATTCAGCAAGGCTTATTTGTTAGGTAAGCACTGTAATAACTGATATGTATTTCTCGTCAATATCAGCCTGATGCACATTGTTAGTTAAAATGTAAGGCTCTTCCATCCACGGAAGTGATCCCATCGAGTCGGGACTGAGGCACGTTATTGACACAATGGTGAGAAGACTTACTGGACTTCAGGGAAGAATCCGTAAAAAAATATTCCTTTCTATCGATGGCATCTAAGAATAGCATGAATGAATCAAAGCTGATTTGGATCTGAGCACAAATggatgtatgcattttataggGAACAAATGCCTcaggtgatttaaaaaaatatattttttaatgacttgtTATTAacccatttttttattttttatattttatatttagattaaaatacCCAGTTGGAAAGTTTTTCACCAGCTTCAAAGCTCGTCTTTTCAAATTCTCCCTTCTGTGcttctgtttgtctgttgtcATAGGGACTGGAGAACACATACGGCGTGCAAAAACATTACTGAAATCGAGATATTAACCAGCCAACCGCTTGTCATTTTTCATGAAGACTGCAAGCTCAAATATCTGGTGTTGCTCTCTCACACAACATGATCGGTCAGCATCCGTGCAGGACAGCACAACAAACACGGATCTGGCtagcattgtgtgtgtgggctTACAGCTGGAGCAAACACGGCTAAAATGTTCATCTTCCACTTGCTGGAACAGGGCGCAAACCTGCACTGAAAACCATGTGGATGCAAAACAAGAATGGGACTCTGCTGGGCACGTATGGCTACTAGTGTGAGACGGCATCTCACTGTCTGTGTCATAAACTCCATAAAAAAAAGGCATCTTCATGACTAATGAGTTGCAATTCAAGCTAAATGTTCTTAA

Function

NR:

description
dual specificity protein phosphatase 23-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35425 True 1915 lncRNA 0.35 1 41366726 41368640

Neighbor

gene id symbol gene type direction distance location
AMCG00008070 NA coding upstream 9893 41350428 ~ 41356833 (+)
AMCG00008065 adrm1,LOC103354471,LOC107727009,LOC105894265 coding upstream 237852 41123903 ~ 41128874 (+)
AMCG00008064 osbpl2b,LOC107727008,LOC107666451,LOC107681391,LOC107705692 coding upstream 247766 41111056 ~ 41118960 (+)
AMCG00008060 NA coding upstream 352853 40993721 ~ 41013873 (+)
AMCG00008059 NA coding upstream 390842 40963149 ~ 40975884 (+)
AMCG00008077 oprl1,LOC106572940,LOC107681404 coding downstream 189780 41558420 ~ 41563189 (+)
AMCG00008081 LOC108440949,LOC107690850 coding downstream 401310 41769950 ~ 41789678 (+)
AMCG00008080 pcmtd2,LOC102294427,LOC108440950,LOC103371493 coding downstream 431609 41800249 ~ 41812742 (+)
AMCG00008083 NA coding downstream 453028 41821668 ~ 41821994 (+)
AMCG00008084 NA coding downstream 458100 41826740 ~ 41832892 (+)
G28298 NA non-coding upstream 107 41364595 ~ 41366619 (+)
G28263 NA non-coding upstream 164872 41199453 ~ 41201854 (+)
G28234 NA non-coding upstream 237098 41129136 ~ 41129628 (+)
G28178 NA non-coding upstream 347340 41018244 ~ 41019386 (+)
G28173 NA non-coding upstream 349478 41016367 ~ 41017248 (+)
G28300 NA non-coding downstream 2226 41370866 ~ 41371821 (+)
G28301 NA non-coding downstream 9411 41378051 ~ 41378293 (+)
G28303 NA non-coding downstream 19943 41388583 ~ 41388784 (+)
G28327 NA non-coding downstream 326714 41695354 ~ 41695708 (+)
G28329 NA non-coding downstream 359572 41728212 ~ 41728433 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other upstream 644981 40663972 ~ 40721745 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other upstream 1119488 40241312 ~ 40247238 (+)
G27974 NA other upstream 1307340 40056632 ~ 40059386 (+)
AMCG00008020 NA other upstream 1531774 39817027 ~ 39834952 (+)
AMCG00008010 NA other upstream 1821119 39540220 ~ 39545607 (+)
G28395 NA other downstream 624219 41992859 ~ 41993377 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other downstream 1044992 42413632 ~ 42437228 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 1737073 43105713 ~ 43108242 (+)
AMCG00008120 NA other downstream 1776165 43144805 ~ 43156072 (+)
AMCG00008132 NA other downstream 1923956 43292596 ~ 43305530 (+)

Expression


Co-expression Network