G28309


Basic Information

Item Value
gene id G28309
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41364762 ~ 41366616 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU35435
atactTCTTACTGGTTGTGAGTGCTACAGTTGCCATATAATATGCAGTTAACATTGCCTGCCAAGTATGTGCAATGCAGAAGCTGCAGTTTTGCAGAAGGCTTTATGTCCAGTAGAGACCTGATGTGTTCAAGATTGCTATAAGACTGCTAATTGTCGATACAGCTGCTTGTTTTCCCGCCTTTTGGGTTAGAATGCAAATGTCACTTCATTCACAGATGAGCTGATGCATAACTTACTTGtcttggaaaaaaacaagtgaAACGGATGCCCCTGAGGTTTTTGGAGAAGAAAGGCGTTCCCCTGGAACAAGGGGGTGGGATGTGCAGTTTGACTTAATTTGGCTTTAAATAGAACGGTGATCTGTGATTGTCTGTAACCAGTATGTACGGTCTATACAGTATATCTGTTTGGTCTGAAATTGTTAGCAacccttattttcttttttgcgtatttttgtaatgaaagaacaaaatggaaaaaaaaaaaactaaaataattgaaCAGTGGACTATTGCAtctattacatttgaaatgtgggATGATACCAGTTTAAATCAGTTACCTTCTAGTTATGAGTAAAAATTATTGTCACTCCACAACGTGTGTCATCACAATACATTCAGTGTAATCACTGTCATGGGAAAACAGTGGTGTGCTCTACTAGGACCTCTTTGGTCTAGGAAGCTGATCATATGCCAAAATTATTACATGATCTCCTCAAGTGATGTTGGGTTCTGTTCATTTCCCTCCATTGATCTTCAGACACCAATACTTGTGCGTTTCATGAtctacactttttctttctttcttttgttcattGTTGTTTGGATGGCCGGTACTATTTAGTCTGTTTTTGTATCAGCAAACGTaaaaattacaaagaaaatgtgacagTACATTTCCAAATGTACGTTCAGCTTTCATGTTCCCACATTGGAAgcaagaggattttttttttttttttcagtatttgtcGCCGATTTGATATTTGAACACCTTTCCGAGTTTACTAtactaaatacaatacaaaattagcAAGGTTACTCCAGCATACCTCACATTGATGTGAAAGGGTGTAAATTAAAGCCTGAGGTGCCAAATTCAGTGGCACAGAGTGTTTAGGATCATTGACCCTTGCCTTATGCCACCCCCAACTGCTACCCCCCACCTCCACTTAGAAACTGGGCTGAATCCTCCTAGATCACggtgctttgaaaatgtgtcaggtgagtgatatatatatatatatatatatattaaccttCATATTTCTATAAACTGTGAACTTGTTATTAGCAGTATAAAACTTTAACAAAACATGGTGTTTGTACATTCtttctcattttttaaaaacagaatattttcGGACTTATTTTGAAGGGGAAGCCTAGGATCTGTGttcctttcttttcatttctccatccctgctgtgtattttgatgtttttttttgtttgttttttaacagtctTGTTAACAAGGATCAGCATGTTACATTAGTCAGGTACCATAGAATATGGTCATGTGACCAGTTTCAGTCTTTGAAGGACTTATGgacagttatttattataataattattactttttttttttttttttacacaaatcaAATTGTTTGAAAATACATGGATGACATACAGGACCaagatttgttttctattaatttgtTGCCAAGGTCTAAGAATAACCCAGGTGTGTTGAGAACGTTCATAGCTGCTATTCTTTTCCAGTTGGTGTGTTGAGGACTCCTGCAGAATGTTTCAAAGAGCTGAGAGTAActtctgtgatttattattgACCTAGACTGGGTGGACCTGTGAAGCCAAGTACAGT

Function

GO:

id name namespace
GO:0052547 regulation of peptidase activity biological_process
GO:0051336 regulation of hydrolase activity biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35435 True 1835 lncRNA 0.36 2 41364762 41366616

Neighbor

gene id symbol gene type direction distance location
AMCG00008073 NA coding downstream 25074 41335578 ~ 41339688 (-)
AMCG00008074 NA coding downstream 54202 41310009 ~ 41310560 (-)
AMCG00008071 NA coding downstream 116600 41240156 ~ 41248162 (-)
AMCG00008072 LOC106566342 coding downstream 135689 41220316 ~ 41229073 (-)
AMCG00008067 NA coding downstream 145090 41202908 ~ 41219672 (-)
AMCG00008075 LOC108275976 coding upstream 2072 41368688 ~ 41378417 (-)
AMCG00008078 npbwr2,LOC106572941,LOC106566359,LOC105026017,LOC107558229 coding upstream 226038 41592654 ~ 41593613 (-)
AMCG00008079 NA coding upstream 227186 41593802 ~ 41758872 (-)
AMCG00008086 NA coding upstream 484592 41851208 ~ 41870711 (-)
AMCG00008089 NA coding upstream 559229 41925845 ~ 41943588 (-)
G28308 NA non-coding downstream 4294 41360144 ~ 41360468 (-)
G28241 NA non-coding downstream 235134 41129138 ~ 41129628 (-)
G28206 NA non-coding downstream 320715 41043696 ~ 41044047 (-)
G28203 NA non-coding downstream 345340 41018244 ~ 41019422 (-)
G28190 NA non-coding downstream 379858 40983619 ~ 40984904 (-)
G28325 NA non-coding upstream 260745 41627361 ~ 41627752 (-)
G28361 NA non-coding upstream 441162 41807778 ~ 41812074 (-)
G28366 NA non-coding upstream 459826 41826442 ~ 41826766 (-)
G28377 NA non-coding upstream 476186 41842802 ~ 41843152 (-)
G28378 NA non-coding upstream 478340 41844956 ~ 41845987 (-)
AMCG00008069 rps21 other downstream 162937 41199489 ~ 41201825 (-)
G28202 NA other downstream 347514 41016159 ~ 41017248 (-)
AMCG00008042 NA other downstream 1076188 40268272 ~ 40288574 (-)
G27861 LOC797048,LOC108410937,LOC107740256,LOC105897858 other downstream 1860170 39500321 ~ 39504592 (-)
AMCG00007993 dynlrb1,LOC106565026 other downstream 2272867 39088557 ~ 39091895 (-)
AMCG00008076 NA other upstream 39175 41405791 ~ 41412224 (-)
AMCG00008085 NA other upstream 480317 41846933 ~ 41849954 (-)
AMCG00008095 NA other upstream 716858 42083474 ~ 42089493 (-)
AMCG00008104 samd10 other upstream 993284 42359900 ~ 42401074 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other upstream 1394388 42761004 ~ 42764654 (-)

Expression


Co-expression Network