G28361


Basic Information

Item Value
gene id G28361
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41807778 ~ 41812074 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU35516
TGCACATTTAGGTGTCATTTTTATTAACTGCAGCCAAGACTGAAAACAATGATGTTTTTCCTCAGATCAGAACATCCTGCTTACATGATTTCTGTGCAAAAAAGTACAACATTAACATtgcaaaaatgtaaaccttAGAAAACCCTTAAACATACATTACAATCAGAGGAAAGCTCTACATGAAATATCCCTTAAGCAGTGCAGGGTTCAAGCAATGTACATTTGGCACTGAGAATACAGCTTTACAGAGTCTCTGAGGGCACATCATCGAAATTGAATCACAGCAAAAATGGAAGGAGAATTACCCAGCTAAACTACCCTCCAAGTATCAGAgatcacatttaatttatatgtatgcaaatatatatatggaattatTCACCTaaaattagaaagaaagaacaacaacaaaaacatggtaAATGCACAAACCTTTGAATCACCATTATGggttatgaaaacaaaaatgtcaataGGCAAGCTTTCTGCAAATGAAACACACAGAAGTCTGGATCAGTATCATTAATTCTTACTATGTATGCTTCGTGATGCCTTTTGATAAAATATGCATTCCTCAGAACTACTACAATGATACTGGAAATGCTGTTCTATGACCAGGGAAACTGGTTACCCTAACCTGCCTCCAAAGTATTTGATTATAAACTGCTCTGCAAAAGAAATgtggttttcaaaatgttaccTTCCATAGatcagcacacaaaaaaaaatcactgcaaATGGTTATTGAAATACccagaaaatgtgttaaaagtgGTTCCCAATCAACAGCCTCCAGTTTTCAGGCTGTAATGATGCATTTCTGATTCCAGGTAGTACATCTGAAGAGCTCCAATACATTCACAAACTTACTTCTCGTCTGATGAGCCCAGTCTGAGACCAGAATTTACACAGTACAGTGCGTCCAGGCCTCCTCGTCTTTGTGCGTTCAAAATTACCCACAGCagatttatgtattgatttttaaaccaCATGAATCCTTGAAAGACCGTAGGCACATGTACTGGAGATACAAGGACTAATAAATACAAGGAACTGAACAAACGTGGAATTTGTGCAAAGTCCCTCAACTAATctgaaatattaaactgaaGCTTGCCTTGAAGATGTCCACAGAAGGGTGACCTACTATCACAGAGAATCAGTCTGCCCTGCTGCTCTTTCTGTCTTACGATCCGACTAGGAGGAAAGAAATGTTGCAATAGTCCTACAAGATAGGAGACTTAATTTAGGCTCAGCAGGTCTTCACTTACTTAGCCAGTctgtttagaaaacaaaatcaatcccATCTTTACCTTTGCTGATCTGAAACGCACTCCTCTTTTTGGACTCCACTAACAGGATGTAACCGGGACTCGAACCTGCGACCCCCGAGCGCAAGATCTGCGACCTCTTCACCTCCGTGGGCTAATAATGATAGCTCCAGACGGCAACGACTTCTCTGAAACACATCACCTATTAGGATACAGCAAATGTCACTTACACATTTCACAAGACAGATACCACTTGCTTTACGCTCCCAGCATAGAGCGATCTATCAAACCGATATGCTAAGCAGTTACAGAAGGTTAAAGAATATAGAgatcacatacatatatatatatatatatatatatatatatatataaagttatatGGTATATTGTAGACTCAAAGTGCTGGTAACGTATCCTGTGGGGGTGAGAATTTTTCTCCTCTCTGttgtattgtaaatgtacaCATCCGTACGATCTTTGTAAGGTATATAGAGAGAAAAAGATATAAATAACACCACACTGTATAGTCATAAGCATATCCttcaacacaaatattaaatactttttttttttttttgcttttcttttttcaatatttattactGATAAATACATAGAGCAATTCCAATAGATAAAACTCTGGCTATATAGAAAGAGAACTACTTCATAGGAACATCTCCATAACATCATTACCACACACAGCTGAATTATTTACGAGTCCTTCAATCCGTATCAATAAAACCTCATTTTTTAAAGCTCACAGAATAAACCTCTCTTTCTTCCGTGAGATCACCTTTCGACTTACCACGTGGCACCCTTGAAGGTGaccattaaacattttgtttttgtttttttaagcgaTTGTAAGCTCTGAAACCATTTACGGGACTTTAATGACATTAATCACAGAAAGGTTATGCAACGTACTCCCCCTTTTCAGAAAGAAGGCCAATACTTGCAATTCTTTGAGACACTGAAGAGGCACTTTAAATTGTGAAGATGGCGTGAGACTCTGGAGCACTCCATTTAtccacaaaaaaatatactgaATATCAAGTCGTTTCTAGGTAAGGAACTACATTTCGGGAAGCAGTGCTTCCCCTTACGCCCGGTAACCTTCTCTTCTCTACCCATGCATCACAAACTCCAAACCtttctcttaattaaaaaaagcgTAGAAAAACGCTTACTGGGAGAGCAGATAAAATGTGAATGACCCTGGCAGCATACTAATGCTTCACTTGGAAACAAGGTTTTCTTGTTTCTCTACCAAGCGGGCAGCGCTAGGTTACATCGCCCATCACTGCAAACTAACTAAACAAGATGAGGTTGGACACAGGACATGTCCTCACTGTCTCGTCAGACACTCGTCGAGAAGCTACAGCTGTGAACCAGATTCTGAAGCTGAGGAGACTTGTCTcaggagcagtttgctcagcgATGACTGTTGTTACAAGGTCACATACATCAGCATGCATCAAAATAAGGGTTCGACCCCTACTTCCCTCGTGGGGACACTTACCTTTGGGGATTAATAGCAACTTGTGACTATCTGGTTACCAGGACTGCACGTACCCAGTCTGTAATGTGCTATTTTAGCCACGAAAGGACTATATTGCTACAAATTGTACAGTGATTAAGTACAGtacttcatatttaatatttgaatacacagctgtttaaatatatatgaccTTATGTTGACACCTTACCCTCTGCTTTCACAACAGGAAAACCACAGAGAGTCGCTGGGTTTTTGACATCTTTTCAAAGCATTCTTCTTTTGGACACTGCTTAGAAATATCAAGAAAGTAAGAacaatttaaactattttaaagatCAACCTCAGGgggctttttcttttgtctgtgaTCTACTGTGTAAAGCAGCACTCCACCCTAATGGTTTTTAAAAACGAATTTgaggaatgaaaaaaagaaaaagaaaacgttTGCTCTTTTGTTCCCTTATtaatgccattattattatttttttttagcaaactAATGACCAGTAATACATCATTAACAGACAGACTATCAATTCTACAAAGAAAGGTCCTCTTTAAAATACTTGGTGCTGGTGATCAAGAGACCTCCCTATGTAGACACAGTTTATAGTTTggaaacacaaatgaaatgaaatggcatTACAATATCCCAGGATACCGAGCAATACAGCAGGTCCCACGCACAGGAGTCgttgctttctttctttgatttcGTTCGACTTCAAAATGACAATGAAGCTTCTGTGCCTCTCCCTTACACTTCGAAGACCCGGCTGCTTCCTTCACCTTCGACAGGCCGCTTAGAGGAGGAAATGCTTGGGAGACCAAACAACAGAACTGACAACATAAATGCAGGCCTCTGAGAATAACTACACTGGGAACATGAAAGTGTAGGGAAAGGATTTTGGTCTACCAAAGAAAATAACCCCTTTACGGTCAGCAAATTCTCCTGCTCTTTATAAAAATAGGCCCCTGGAAAAATAAAGGACAGACAACAGTTAGCTGGGCCCTGGATTGCCTACAGGGgaagattttgtatttctgcttAGCTAGACTAGATTGATAGGCGGCGACCACTTCAACACAACCTCTTCTATTTTTCCCTGTAATACAGCAAGTACATTTTAAGGGGTTCGGGCAAAGGGAGGCTCAAGATTTTCTCCCTCAGCAAGTTGATGGGCGGCTCGGGCTTCAGGTCGCcctgctccctctcctcctcgtcctcgtcctcctcgGCCCGCTCCTCCTCTATCTCGTCgcagttgttgttgtcgtcCATGGGGTTGGGGATCATGCGGCTCACGAAGACGTGCTTGTTGGTCAAGAGGACGGAGTCCACGCGGCGCCGGTGCACTCGCCTGCGTTTGAAGCGGGGGCCGCTCTTGGCCGCGCCGCCACTCTTCGCCTTGTCTTGGTTGATGATCTTCTTCAGGGTGTGGCGGATGGAAATGCGCGCCAGGTCCTGCAGCGTCCGCACTTCGAACATAGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU35516 True 4275 lncRNA 0.41 2 41807778 41812074

Neighbor

gene id symbol gene type direction distance location
AMCG00008079 NA coding downstream 48906 41593802 ~ 41758872 (-)
AMCG00008078 npbwr2,LOC106572941,LOC106566359,LOC105026017,LOC107558229 coding downstream 214165 41592654 ~ 41593613 (-)
AMCG00008075 LOC108275976 coding downstream 429361 41368688 ~ 41378417 (-)
AMCG00008073 NA coding downstream 468090 41335578 ~ 41339688 (-)
AMCG00008074 NA coding downstream 497218 41310009 ~ 41310560 (-)
AMCG00008086 NA coding upstream 39134 41851208 ~ 41870711 (-)
AMCG00008089 NA coding upstream 113771 41925845 ~ 41943588 (-)
AMCG00008091 NA coding upstream 165613 41977687 ~ 41997684 (-)
AMCG00008096 slc17a9b,slc17a9,LOC107563661,LOC107560897,LOC106566596 coding upstream 437572 42249646 ~ 42267791 (-)
AMCG00008101 NA coding upstream 483368 42295442 ~ 42299333 (-)
G28325 NA non-coding downstream 180026 41627361 ~ 41627752 (-)
G28309 NA non-coding downstream 441162 41364762 ~ 41366616 (-)
G28308 NA non-coding downstream 447310 41360144 ~ 41360468 (-)
G28241 NA non-coding downstream 678150 41129138 ~ 41129628 (-)
G28206 NA non-coding downstream 763731 41043696 ~ 41044047 (-)
G28366 NA non-coding upstream 14368 41826442 ~ 41826766 (-)
G28377 NA non-coding upstream 30728 41842802 ~ 41843152 (-)
G28378 NA non-coding upstream 32882 41844956 ~ 41845987 (-)
G28410 NA non-coding upstream 279383 42091457 ~ 42092198 (-)
G28446 NA non-coding upstream 471885 42283959 ~ 42290245 (-)
AMCG00008076 NA other downstream 395554 41405791 ~ 41412224 (-)
AMCG00008069 rps21 other downstream 605953 41199489 ~ 41201825 (-)
G28202 NA other downstream 790530 41016159 ~ 41017248 (-)
AMCG00008042 NA other downstream 1519204 40268272 ~ 40288574 (-)
G27861 LOC797048,LOC108410937,LOC107740256,LOC105897858 other downstream 2303186 39500321 ~ 39504592 (-)
AMCG00008085 NA other upstream 34859 41846933 ~ 41849954 (-)
AMCG00008095 NA other upstream 271400 42083474 ~ 42089493 (-)
AMCG00008104 samd10 other upstream 547826 42359900 ~ 42401074 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other upstream 948930 42761004 ~ 42764654 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other upstream 1285037 43097111 ~ 43120164 (-)

Expression


Co-expression Network